Browse Element(s) Details


OsAffx.13544.1.S1_at

Description tigr:9631.m05795
TID=OsAffx.13544.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=putative galactosyltransferase
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g5890011/11galactosyltransferase family protein, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g58820NANA3+33434923..33439401aminoacyl-tRNA synthetase family, putative, expressed
LOC_Os03g58830Os.33544.1.S1_at10/113+33439814..33443954bHLH transcription factor, putative, expressed
LOC_Os03g58840Os.7234.1.S1_at11/113+33446068..33449304Vesicle-associated membrane protein 724, putative, expressed
LOC_Os03g58850OsAffx.13543.1.S1_s_at11/113+33451860..33452657expressed protein
LOC_Os03g58850Os.52854.1.S1_at1/113+33451860..33452657expressed protein
LOC_Os03g58860Os.57314.1.S1_at3/113+33456300..33456617expressed protein
LOC_Os03g58870Os.57314.1.S1_at2/113+33457088..33457621hypothetical protein
LOC_Os03g58880NANA3+33459101..33460675prolyl 4-hydroxylase, putative, expressed
LOC_Os03g58890Os.50961.1.S1_at10/113+33461507..33463461oxidoreductase, 2OG-Fe oxygenase family protein, putative, expressed
LOC_Os03g58900OsAffx.13544.1.S1_at11/113+33464318..33467611galactosyltransferase family protein, putative, expressed
LOC_Os03g58910Os.51706.1.S1_at10/113+33469363..33483508expressed protein
LOC_Os03g58910Os.25102.1.S1_at3/113+33469363..33483508expressed protein
LOC_Os03g58920Os.23190.1.A1_at11/113+33485397..33489986galactosyltransferase family protein, putative, expressed
LOC_Os03g58930NANA3+33492522..33495095expressed protein

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Gene Ontology Classification
GO idTypeName
GO:0016757molecular_functiontransferase activity, transferring glycosyl groups
GO:0016758molecular_functiontransferase activity, transferring hexosyl groups
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.13544.1.S1_at--334--7711Chr03:33465723..33465746 (24 bp)
GGGTGCGAATTGTTCCTGCAAAATA
LOC_Os03g58900
OsAffx.13544.1.S1_at--1157--8131Chr03:33465167..33465191 (25 bp)
GGAAGTATACCCACCTTATGCTAAT
LOC_Os03g58900
OsAffx.13544.1.S1_at--763--791Chr03:33465144..33465168 (25 bp)
ATGGGCCAGGCTACGTAATTTCTTC
LOC_Os03g58900
OsAffx.13544.1.S1_at--199--191Chr03:33465127..33465151 (25 bp)
ATTTCTTCAGACATTGCCCAGTACA
LOC_Os03g58900
OsAffx.13544.1.S1_at--713--9751Chr03:33464992..33465110 (25 bp)
TAATCAGACGCTAAGACTCTTCAAG
LOC_Os03g58900
OsAffx.13544.1.S1_at--780--8871Chr03:33464938..33464962 (25 bp)
TGAGAAGTTCAACAGCACCCGTCAG
LOC_Os03g58900
OsAffx.13544.1.S1_at--469--3351Chr03:33464923..33464947 (25 bp)
CACCCGTCAGCCAGTGAAGTATTCG
LOC_Os03g58900
OsAffx.13544.1.S1_at--565--6871Chr03:33464905..33464929 (25 bp)
GTATTCGCACGATGTCAAGTTCTTC
LOC_Os03g58900
OsAffx.13544.1.S1_at--445--2831Chr03:33464889..33464913 (25 bp)
AAGTTCTTCCAGTCCGGTTGCTTTG
LOC_Os03g58900
OsAffx.13544.1.S1_at--557--7911Chr03:33464874..33464898 (25 bp)
GGTTGCTTTGATGGCTACTACACCG
LOC_Os03g58900
OsAffx.13544.1.S1_at--200--3031Chr03:33464840..33464864 (25 bp)
AATCCCCGCAGCAGATGATTTGCCT
LOC_Os03g58900
Target Sequence 
GGGTGCGAATTGTTCCTGCAAAATACATAATGAAGTGTGATGACGATACATTTGTTAGAATTGACTCAGTGCTGGATCAA
GTGAAGAAAGTAGAGAGGGAAGGAAGCATGTATATTGGTAATATAAACTACTATCACAGACCTTTACGATCTGGAAAGTG
GTCTGTATCATATGAGGAATGGCAAGAGGAAGTATACCCACCTTATGCTAATGGGCCAGGCTACGTAATTTCTTCAGACA
TTGCCCAGTACATTGTATCTGAATTCGATAATCAGACGCTAAGACTCTTCAAGATGGAAGACGTGAGTATGGGAATGTGG
GTTGAGAAGTTCAACAGCACCCGTCAGCCAGTGAAGTATTCGCACGATGTCAAGTTCTTCCAGTCCGGTTGCTTTGATGG
CTACTACACCGCACACTACCAATCCCCGCAGCAGATGATTTGCCT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.13544.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis