Browse Element(s) Details


Os.57314.1.S1_at

Description gb:AK111283.1
DB_XREF= gi:32996492
TID=Os.57314.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.57314 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-180-H06, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-180-H06, full insert sequence.
FL= gb:AK111283.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g588603/11expressed protein
LOC_Os03g588702/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g58810Os.5799.1.S1_s_at11/113+33428468..33432373ATP-dependent RNA helicase C1F7.02c, putative, expressed
LOC_Os03g58820NANA3+33434923..33439401aminoacyl-tRNA synthetase family, putative, expressed
LOC_Os03g58830Os.33544.1.S1_at10/113+33439814..33443954bHLH transcription factor, putative, expressed
LOC_Os03g58840Os.7234.1.S1_at11/113+33446068..33449304Vesicle-associated membrane protein 724, putative, expressed
LOC_Os03g58850OsAffx.13543.1.S1_s_at11/113+33451860..33452657expressed protein
LOC_Os03g58850Os.52854.1.S1_at1/113+33451860..33452657expressed protein
LOC_Os03g58860Os.57314.1.S1_at3/113+33456300..33456617expressed protein
LOC_Os03g58870Os.57314.1.S1_at2/113+33457088..33457621hypothetical protein
LOC_Os03g58880NANA3+33459101..33460675prolyl 4-hydroxylase, putative, expressed
LOC_Os03g58890Os.50961.1.S1_at10/113+33461507..33463461oxidoreductase, 2OG-Fe oxygenase family protein, putative, expressed
LOC_Os03g58900OsAffx.13544.1.S1_at11/113+33464318..33467611galactosyltransferase family protein, putative, expressed
LOC_Os03g58910Os.51706.1.S1_at10/113+33469363..33483508expressed protein
LOC_Os03g58910Os.25102.1.S1_at3/113+33469363..33483508expressed protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.57314.1.S1_at--480--971Chr03:33457423..33457447 (25 bp)
AGGAGGGTGCCTAATGGCCCTGATC
LOC_Os03g58870
Os.57314.1.S1_at--867--871Chr03:33457410..33457434 (25 bp)
ATGGCCCTGATCCTATTCACAACAG
LOC_Os03g58870
Os.57314.1.S1_at--795--2811Chr03:33456448..33456472 (25 bp)
AAGTCAGGAAGATCTCCGGGCCGAG
LOC_Os03g58860
Os.57314.1.S1_at--183--10011Chr03:33456421..33456445 (25 bp)
TAGCGGCACGCATCCCGAGGCATGG
LOC_Os03g58860
Os.57314.1.S1_at--629--2931Chr03:33456379..33456403 (25 bp)
AAGGCAGGCATATCTGTGGAGCAAA
LOC_Os03g58860
Os.57314.1.S1_at--587--1051Chr03:33456271..33456295 (25 bp)
AGGTGGCCTATATCTTCTGTAAGCA
NONE
Os.57314.1.S1_at--289--8891Chr03:33456151..33456175 (25 bp)
TGAGTATTAAGCTTCCCTCTCACAA
NONE
Os.57314.1.S1_at--737--7651Chr03:33456097..33456121 (25 bp)
GGGATGTGGGCAAGAGCTCCCTTCT
NONE
Os.57314.1.S1_at--600--10851Chr03:33456069..33456093 (25 bp)
TTGGCACTAGTAACTTTAGACATCT
NONE
Os.57314.1.S1_at--266--931Chr03:33456002..33456026 (25 bp)
AGGCATTCATTCTTTTCCCTTGTCA
NONE
Os.57314.1.S1_at--66--9331Chr03:33455987..33456011 (25 bp)
TCCCTTGTCACTGTGTATCACTTAC
NONE
Target Sequence 
AGGAGGGTGCCTAATGGCCCTGATCCTATTCACAACAGGGGAACCGGCAAGTCAGGAAGATCTCCGGGCCGAGCGTAGCG
GCACGCATCCCGAGGCATGGAAGGTTCCGATTCAAGGAAGGCAGGCATATCTGTGGAGCAAAGAGATGGTTGCATTGCAA
GGAGGAACAAAACAAGAACAACATTATGATGGGGTCTGGCTGTGGATGTTGGTGTAACTAGGGGGAGGTGGCCTATATCT
TCTGTAAGCACTGCTATTTAAGACAGTTTTAAGCATAAAAACTTTAGCTTTTTGCAAACAAAGGCTGTTCTAGTGGTGGG
GAAGGTTTTTTTGTAAAGAGAGCAGTGAGTATTAAGCTTCCCTCTCACAACAAAACAAGCATCAAAGATTCTTGGCAAAG
GGATGTGGGCAAGAGCTCCCTTCTTTTTTGGCACTAGTAACTTTAGACATCTAAGTAGTACTTTGTTTCTTTTCTTTTTT
TTTTTTTTTTGTTCCAGGCATTCATTCTTTTCCCTTGTCACTGTGTATCACTTAC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.57314.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis