Browse Element(s) Details


Os.7234.1.S1_at

Description gb:AK102944.1
DB_XREF= gi:32988153
TID=Os.7234.1
CNT=71
FEA=FLmRNA
TIER=FL
STK=0
UG=Os.7234 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J033114L14, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033114L14, full insert sequence.
FL= gb:AK102944.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g5884011/11Vesicle-associated membrane protein 724, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g58790Os.10884.1.S1_at11/113+33421225..33423077ATPase 2, putative, expressed
LOC_Os03g58790OsAffx.25760.1.S1_x_at1/113+33421225..33423077ATPase 2, putative, expressed
LOC_Os03g58800OsAffx.25760.1.S1_x_at11/113+33426677..33428469ATPase, AAA family protein, expressed
LOC_Os03g58800OsAffx.25760.1.S1_at11/113+33426677..33428469ATPase, AAA family protein, expressed
LOC_Os03g58810Os.5799.1.S1_s_at11/113+33428468..33432373ATP-dependent RNA helicase C1F7.02c, putative, expressed
LOC_Os03g58820NANA3+33434923..33439401aminoacyl-tRNA synthetase family, putative, expressed
LOC_Os03g58830Os.33544.1.S1_at10/113+33439814..33443954bHLH transcription factor, putative, expressed
LOC_Os03g58840Os.7234.1.S1_at11/113+33446068..33449304Vesicle-associated membrane protein 724, putative, expressed
LOC_Os03g58850OsAffx.13543.1.S1_s_at11/113+33451860..33452657expressed protein
LOC_Os03g58850Os.52854.1.S1_at1/113+33451860..33452657expressed protein
LOC_Os03g58860Os.57314.1.S1_at3/113+33456300..33456617expressed protein
LOC_Os03g58870Os.57314.1.S1_at2/113+33457088..33457621hypothetical protein
LOC_Os03g58880NANA3+33459101..33460675prolyl 4-hydroxylase, putative, expressed
LOC_Os03g58890Os.50961.1.S1_at10/113+33461507..33463461oxidoreductase, 2OG-Fe oxygenase family protein, putative, expressed
LOC_Os03g58900OsAffx.13544.1.S1_at11/113+33464318..33467611galactosyltransferase family protein, putative, expressed
LOC_Os03g58910Os.51706.1.S1_at10/113+33469363..33483508expressed protein
LOC_Os03g58910Os.25102.1.S1_at3/113+33469363..33483508expressed protein

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Gene Ontology Classification
GO idTypeName
GO:0005768cellular_componentendosome
GO:0005886cellular_componentplasma membrane
GO:0016020cellular_componentmembrane
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.7234.1.S1_at--887--31Chr03:33447959..33447983 (25 bp)
ATTGAACTGCTCGTTGACAAGACCG
LOC_Os03g58840
Os.7234.1.S1_at--535--5611Chr03:33447974..33447998 (25 bp)
GACAAGACCGAGAATCTGCGTTCAC
LOC_Os03g58840
Os.7234.1.S1_at--358--6751Chr03:33448869..33448888 (20 bp)
GTTCACAGGCCCAAGATTTCAGGCA
LOC_Os03g58840
Os.7234.1.S1_at--113--3171Chr03:33448961..33448985 (25 bp)
AATTGCGCTCATCCTTATCATAATC
LOC_Os03g58840
Os.7234.1.S1_at--515--10751Chr03:33449026..33449050 (25 bp)
TTGACTCATTCAACTGCACTTACAG
LOC_Os03g58840
Os.7234.1.S1_at--57--5111Chr03:33449041..33449065 (25 bp)
GCACTTACAGTACTGCTTGCTTGGG
LOC_Os03g58840
Os.7234.1.S1_at--1010--10851Chr03:33449095..33449119 (25 bp)
TTGGTTCTTTCTAGTTTGTGCTCTG
LOC_Os03g58840
Os.7234.1.S1_at--71--10471Chr03:33449125..33449149 (25 bp)
TTACGGCGCCTGAGTGTTTACGCTG
LOC_Os03g58840
Os.7234.1.S1_at--722--9951Chr03:33449143..33449167 (25 bp)
TACGCTGTCGTGTCTGTTGAATGCT
LOC_Os03g58840
Os.7234.1.S1_at--1048--10731Chr03:33449159..33449183 (25 bp)
TTGAATGCTGGTTGGTGACTCGGTC
LOC_Os03g58840
Os.7234.1.S1_at--803--6511Chr03:33449240..33449264 (25 bp)
GATTTTAACCTCCTTGTTCTATTAT
LOC_Os03g58840
Target Sequence 
ATTGAACTGCTCGTTGACAAGACCGAGAATCTGCGTTCACAGGCCCAAGATTTCAGGCAGGCAGGAACACAGGTAAGGAG
AAAGATGTGGCTGCAAAACATGAAGATCAAGCTGATTGTTCTTGGCATAATAATTGCGCTCATCCTTATCATAATCCTGT
CCGTGTGCCATGGATTCAAATGCAAGTAGGCATAAATTGACTCATTCAACTGCACTTACAGTACTGCTTGCTTGGGGCAA
AAAGGGGGGGAAATTGGAGAGGTGTTTGGTTCTTTCTAGTTTGTGCTCTGGCTGGTTACGGCGCCTGAGTGTTTACGCTG
TCGTGTCTGTTGAATGCTGGTTGGTGACTCGGTCAGTGGGTTGTGGGTTGAAGTGTCGTGTATTTTTGGATGCTATGTGT
GTATAGCTTGGATTTTAACCTCCTTGTTCTATTAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.7234.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis