Browse Element(s) Details


OsAffx.25759.1.S1_at

Description tigr:9631.m05780
TID=OsAffx.25759.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g5876411/11F-box domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g58720Os.18152.1.S1_at10/113+33376632..33390046RNA recognition motif family protein, expressed
LOC_Os03g58720OsAffx.5632.1.S1_at2/113+33376632..33390046RNA recognition motif family protein, expressed
LOC_Os03g58720OsAffx.5632.1.S1_x_at2/113+33376632..33390046RNA recognition motif family protein, expressed
LOC_Os03g58730Os.2987.3.S1_x_at1/113+33386816..33389951retrotransposon protein, putative, Ty1-copia subclass, expressed
LOC_Os03g58740Os.27800.1.A1_at11/113+33392339..33395809expressed protein
LOC_Os03g58750NANA3+33398391..33399860protein kinase family protein, putative, expressed
LOC_Os03g58764OsAffx.25759.1.S1_at11/113+33405025..33411003F-box domain containing protein, expressed
LOC_Os03g58764Os.4782.1.S1_at2/113+33405025..33411003F-box domain containing protein, expressed
LOC_Os03g58764Os.16011.1.A1_at1/113+33405025..33411003F-box domain containing protein, expressed
LOC_Os03g58780Os.11293.2.S1_x_at11/113+33413277..33419140expressed protein
LOC_Os03g58780Os.11293.1.S1_at10/113+33413277..33419140expressed protein
LOC_Os03g58790Os.10884.1.S1_at11/113+33421225..33423077ATPase 2, putative, expressed
LOC_Os03g58790OsAffx.25760.1.S1_x_at1/113+33421225..33423077ATPase 2, putative, expressed
LOC_Os03g58800OsAffx.25760.1.S1_x_at11/113+33426677..33428469ATPase, AAA family protein, expressed
LOC_Os03g58800OsAffx.25760.1.S1_at11/113+33426677..33428469ATPase, AAA family protein, expressed
LOC_Os03g58810Os.5799.1.S1_s_at11/113+33428468..33432373ATP-dependent RNA helicase C1F7.02c, putative, expressed
LOC_Os03g58820NANA3+33434923..33439401aminoacyl-tRNA synthetase family, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.25759.1.S1_at--596--8411Chr03:33406248..33406272 (25 bp)
GGCCGATATGAAGACTGCACCTACA
LOC_Os03g58764
OsAffx.25759.1.S1_at--499--10131Chr03:33406287..33406311 (25 bp)
TATGCAGTCACTACGTTGGGAGAAA
LOC_Os03g58764
OsAffx.25759.1.S1_at--925--651Chr03:33406315..33406339 (25 bp)
ATGCAATTGACCTCAGTGGCCCTAT
LOC_Os03g58764
OsAffx.25759.1.S1_at--72--2271Chr03:33406394..33406418 (25 bp)
AAATACATACATACTTCACGCGCCA
LOC_Os03g58764
OsAffx.25759.1.S1_at--308--8111Chr03:33406454..33406478 (25 bp)
GGACGACTACATTCATCCGTCAGAA
LOC_Os03g58764
OsAffx.25759.1.S1_at--94--3051Chr03:33406563..33406587 (25 bp)
AATCGCTTGCAAGACCATGTCCTGT
LOC_Os03g58764
OsAffx.25759.1.S1_at--716--771Chr03:33406579..33406603 (25 bp)
ATGTCCTGTTTGTTGGGCATAACCA
LOC_Os03g58764
OsAffx.25759.1.S1_at--383--10291Chr03:33406609..33406633 (25 bp)
TTTGCCTCCGCGCTGAAGAATTTCC
LOC_Os03g58764
OsAffx.25759.1.S1_at--676--10291Chr03:33406629..33406653 (25 bp)
TTTCCGTCTCTCAAGGCAAATCATG
LOC_Os03g58764
OsAffx.25759.1.S1_at--144--3731Chr03:33406655..33406679 (25 bp)
CTACTTCACCGATGACAGCCAGAAT
LOC_Os03g58764
OsAffx.25759.1.S1_at--33--3451Chr03:33406784..33406808 (25 bp)
CAGTCCGGTTTGGATTACACCCAGT
LOC_Os03g58764
Target Sequence 
GGCCGATATGAAGACTGCACCTACAAGGATGGCCTGCTATATGCAGTCACTACGTTGGGAGAAATTCATGCAATTGACCT
CAGTGGCCCTATTGCCATGGTGAAGGTTGTTATGGGAAAGGTCATGGATATAGGGGATGGTGACAGAAATACATACATAC
TTCACGCGCCATGGGGTGATGTGCTGCAAATCTGGAAAACAGAAGAGGACGACTACATTCATCCGTCAGAAGATGATTAT
GATGCCATTTTGAAGAATACTGCAAGTATCGAAGTATATAAGTCTGACTTGGTGGAAGAAAAGCTTGTGAAGATCAATCG
CTTGCAAGACCATGTCCTGTTTGTTGGGCATAACCAGACACTTTGCCTCCGCGCTGAAGAATTTCCGTCTCTCAAGGCAA
ATCATGCCTACTTCACCGATGACAGCCAGAATTGGATAACAGAATTCAAGAATAATAGACGTGATATTGGAGTATTCAAC
TTGGAAGATAACAGCAGGGATGAACTTGGGTCTCCTCAGCTTTGGTCCAACTGGCCCAGTCCGGTTTGGATTACACCCAG
T

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.25759.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis