Browse Element(s) Details


Os.27800.1.A1_at

Description gb:AK106415.1
DB_XREF= gi:32991624
TID=Os.27800.1
CNT=7
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.27800 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-103-A05, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-103-A05, full insert sequence.
FL= gb:AK106415.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g5874011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g58700Os.11600.1.S1_at11/113+33363847..33372006vacuolar protein sorting-associated protein 35 family protein, putative, expressed
LOC_Os03g58710Os.14346.1.S1_at11/113+33372162..33375649riboflavin biosynthesis protein, putative, expressed
LOC_Os03g58720Os.18152.1.S1_at10/113+33376632..33390046RNA recognition motif family protein, expressed
LOC_Os03g58720OsAffx.5632.1.S1_at2/113+33376632..33390046RNA recognition motif family protein, expressed
LOC_Os03g58720OsAffx.5632.1.S1_x_at2/113+33376632..33390046RNA recognition motif family protein, expressed
LOC_Os03g58730Os.2987.3.S1_x_at1/113+33386816..33389951retrotransposon protein, putative, Ty1-copia subclass, expressed
LOC_Os03g58740Os.27800.1.A1_at11/113+33392339..33395809expressed protein
LOC_Os03g58750NANA3+33398391..33399860protein kinase family protein, putative, expressed
LOC_Os03g58764OsAffx.25759.1.S1_at11/113+33405025..33411003F-box domain containing protein, expressed
LOC_Os03g58764Os.4782.1.S1_at2/113+33405025..33411003F-box domain containing protein, expressed
LOC_Os03g58764Os.16011.1.A1_at1/113+33405025..33411003F-box domain containing protein, expressed
LOC_Os03g58780Os.11293.2.S1_x_at11/113+33413277..33419140expressed protein
LOC_Os03g58780Os.11293.1.S1_at10/113+33413277..33419140expressed protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.27800.1.A1_at--511--7732Chr12:2745391..2745611 (25 bp)
GGTGGAGGGCCGTGCAATCTACTAC
NONE
Os.27800.1.A1_at--61--5991Chr03:33393692..33393716 (25 bp)
GAGACACGCTCATTCACATTCAATG
LOC_Os03g58740
Os.27800.1.A1_at--785--8011Chr03:33393727..33393751 (25 bp)
GGAGGAGCTCACACACAAGTTGCAG
LOC_Os03g58740
Os.27800.1.A1_at--66--1391Chr03:33393756..33393780 (25 bp)
AGACGGGCCTCCATGACATAATCAT
LOC_Os03g58740
Os.27800.1.A1_at--947--4951Chr03:33393853..33393877 (25 bp)
GCATATTGTGCTTGTCCAGGAGTCC
LOC_Os03g58740
Os.27800.1.A1_at--947--2411Chr03:33395495..33395519 (25 bp)
AAAACATTTCCATGGCCATACGGTC
LOC_Os03g58740
Os.27800.1.A1_at--1098--10351Chr03:33395586..33395610 (25 bp)
TTTTTCCCTGTACCAGTGGAGTACT
LOC_Os03g58740
Os.27800.1.A1_at--920--8711Chr03:33395625..33395649 (25 bp)
TGTCGTGTGTATATAGCCTAGCCTA
LOC_Os03g58740
Os.27800.1.A1_at--1129--3111Chr03:33395655..33395679 (25 bp)
AATTAGCTGAGGTATTCGCATGCAA
LOC_Os03g58740
Os.27800.1.A1_at--87--5991Chr03:33395731..33395755 (25 bp)
GAGACCTCAAACCATCTATACGGCT
LOC_Os03g58740
Os.27800.1.A1_at--399--3671Chr03:33395746..33395770 (25 bp)
CTATACGGCTATACCCTTCATTTAT
LOC_Os03g58740
Target Sequence 
GGTGGAGGGCCGTGCAATCTACTACCACATTGCAGATGATAAGGGCGATGTGGACGAAGACGACGAGACACGCTCATTCA
CATTCAATGGCTCCAACTTGGAGGAGCTCACACACAAGTTGCAGGAAGAGACGGGCCTCCATGACATAATCATCTGCACA
CGCAGCCCTATCACTGGCAAACTCGCTCCTCTCCGCTTGCAGCTGCCACCAAACAATGCAGCAATGCATATTGTGCTTGT
CCAGGAGTCCTCAAAAGTGGCAAAAACATTTCCATGGCCATACGGTCCATAATCTATGGAGAGAAGGTAGCGAATTGGGT
GGAATGATTGGTTGTACATTTACTCCATTCATTTTTTTCCCTGTACCAGTGGAGTACTTGGTAGGATCTAATTGTCGTGT
GTATATAGCCTAGCCTAAATTAAATTAGCTGAGGTATTCGCATGCAAAAAAAGAAAAAGAAAAGAAGAGGAGATATTTAT
AGTTCATAGTTGAGTTTTGAGACCTCAAACCATCTATACGGCTATACCCTTCATTTAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.27800.1.A1_at     

Putative homologies in rice

Putative homologies in arabidopsis