Browse Element(s) Details


Os.18205.1.S1_at

Description gb:AK103365.1
DB_XREF= gi:32988574
TID=Os.18205.1
CNT=6
FEA=FLmRNA
TIER=FL
STK=2
UG=Os.18205 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) putative RecA protein (P0035F12.15), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033126O05, full insert sequence.
FL= gb:AK103365.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g6751010/11Protein recA, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g67480Os.50489.1.S1_at11/111+39538156..39543454Helix-loop-helix DNA-binding domain containing protein, expressed
LOC_Os01g67480Os.12030.1.S1_at11/111+39538156..39543454Helix-loop-helix DNA-binding domain containing protein, expressed
LOC_Os01g67490OsAffx.23959.2.S1_at11/111+39543428..39546305OTU-like cysteine protease family protein, expressed
LOC_Os01g67490Os.26271.1.A1_s_at11/111+39543428..39546305OTU-like cysteine protease family protein, expressed
LOC_Os01g67490Os.42585.1.S1_at10/111+39543428..39546305OTU-like cysteine protease family protein, expressed
LOC_Os01g67500Os.8271.1.S1_a_at11/111+39549117..39553422armadillo/beta-catenin repeat family protein, putative, expressed
LOC_Os01g67500Os.8271.1.S1_at11/111+39549117..39553422armadillo/beta-catenin repeat family protein, putative, expressed
LOC_Os01g67500Os.8271.2.S1_x_at7/111+39549117..39553422armadillo/beta-catenin repeat family protein, putative, expressed
LOC_Os01g67510Os.18205.1.S1_at10/111+39565700..39570792Protein recA, putative, expressed
LOC_Os01g67520Os.49594.1.S1_at11/111+39571459..39573977VTC2, putative, expressed
LOC_Os01g67530Os.5174.1.S1_at11/111+39579852..39583588AMP-binding enzyme family protein, expressed
LOC_Os01g67540OsAffx.21790.1.S1_at11/111+39584856..39588099AMP-binding enzyme family protein, expressed
LOC_Os01g67550Os.54247.1.S1_at6/111+39589761..39593236FAD binding domain containing protein
LOC_Os01g67560Os.14630.1.S1_at11/111+39593630..39596178Uncharacterized BCR, COG1963 family protein, expressed
LOC_Os01g67560Os.14630.2.S1_at11/111+39593630..39596178Uncharacterized BCR, COG1963 family protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006281biological_processDNA repair
GO:0006310biological_processDNA recombination
GO:0009432biological_processSOS response
GO:0003677molecular_functionDNA binding
GO:0008094molecular_functionDNA-dependent ATPase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.18205.1.S1_at--633--7131Chr01:39566251..39566275 (25 bp)
GTCATATCGTGGTAAAGATGCCCTT
LOC_Os01g67510
Os.18205.1.S1_at--177--8931Chr01:39566233..39566257 (25 bp)
TGCCCTTAAATCTTACCTCAACGAA
LOC_Os01g67510
Os.18205.1.S1_at--160--7411Chr01:39566126..39566150 (25 bp)
GTGATTTCCTGAGTGATCTGCCTGA
LOC_Os01g67510
Os.18205.1.S1_at--655--6411Chr01:39566112..39566136 (25 bp)
GATCTGCCTGAAGAGAGTCTCGCCA
LOC_Os01g67510
Os.18205.1.S1_at--168--4411Chr01:39566091..39566115 (25 bp)
GCCACTGAAACATCCTCCGAGGAGG
LOC_Os01g67510
Os.18205.1.S1_at--77--3111Chr01:39566000..39566024 (25 bp)
AATATGCGCTGAGCAGTTATTCCAC
LOC_Os01g67510
Os.18205.1.S1_at--687--1311Chr01:39565949..39565973 (25 bp)
AGATGTCATTTTGGCTGCACCGGGC
LOC_Os01g67510
Os.18205.1.S1_at--422--5491Chr01:39565898..39565922 (25 bp)
GAACATCCTTCAGTTGTCAAATGCC
LOC_Os01g67510
Os.18205.1.S1_at--494--271Chr01:39565765..39565789 (25 bp)
ATATGTCGCATATCTGGGATTCCTC
LOC_Os01g67510
Os.18205.1.S1_at--780--7191Chr01:39565740..39565764 (25 bp)
GTCGGTTCTGGCTTGAGATACACTT
LOC_Os01g67510
Os.18205.1.S1_at--385--10191Chr01:39565700..39565724 (25 bp)
TATTTGATTATTCCGGTTCCATTCC
NONE
Target Sequence 
GTCATATCGTGGTAAAGATGCCCTTAAATCTTACCTCAACGAAAATGAAAGTATCGCAAAAGAACTGGAGACGAATTTAA
GGAAATTGATGGAAACTCAAGCACCTAAAAAGCAGGAGGATGAAGGTGATTTCCTGAGTGATCTGCCTGAAGAGAGTCTC
GCCACTGAAACATCCTCCGAGGAGGAACTGGCAGCTGTAATAGAAGCTTAATCAGTGATGCTTAATCAGTGATGATAGAT
CAACAAGAAGGAATATGCGCTGAGCAGTTATTCCACTGAACCATACATATTTTGGTTCTTGGAGATGTCATTTTGGCTGC
ACCGGGCATATAGAATGTGTGGAATTCGTATTTGAACATCCTTCAGTTGTCAAATGCCTGGAGCGAAGTGAGGTAGAGCC
GGGGAAGGACCGGGGGGCTTACGTATGGACTTGTATGGTGGCTATTTAGACATTGAAAGGGTTATTAGTAGAATGTAACC
ATGTATATATGTCGCATATCTGGGATTCCTCGTCGGTTCTGGCTTGAGATACACTTACTAAATGCTTCTGATATTTGATT
ATTCCGGTTCCATTCC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.18205.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis