Browse Element(s) Details


Os.18216.1.S1_at

Description gb:AK071635.1
DB_XREF= gi:32981658
TID=Os.18216.1
CNT=12
FEA=FLmRNA
TIER=FL
STK=0
UG=Os.18216 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) putative splicing factor-like protein (P0011G08.17), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023100L15, full insert sequence.
FL= gb:AK071635.1 gb:AK060171.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g0629010/11RNA recognition motif family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g06230NANA1+2957996..2958271Auxin responsive protein
LOC_Os01g06240OsAffx.23133.1.S1_at11/111+2959224..2961719D-mannose binding lectin family protein, expressed
LOC_Os01g06250OsAffx.10935.1.S1_x_at11/111+2963126..2964148Dirigent-like protein
LOC_Os01g06250OsAffx.10935.1.S1_at11/111+2963126..2964148Dirigent-like protein
LOC_Os01g06260OsAffx.10558.2.S1_s_at11/111+2965956..2967533hypothetical protein
LOC_Os01g06260OsAffx.10558.2.S1_at11/111+2965956..2967533hypothetical protein
LOC_Os01g06260OsAffx.10558.1.S1_x_at9/111+2965956..2967533hypothetical protein
LOC_Os01g06260OsAffx.10558.1.S1_at5/111+2965956..2967533hypothetical protein
LOC_Os01g06270Os.19218.1.S1_x_at11/111+2967932..2976115expressed protein
LOC_Os01g06270Os.37997.1.S1_s_at11/111+2967932..2976115expressed protein
LOC_Os01g06270OsAffx.10936.1.S1_x_at10/111+2967932..2976115expressed protein
LOC_Os01g06280Os.33613.1.S1_at11/111+2979344..2982962Protein kinase domain containing protein, expressed
LOC_Os01g06290Os.18216.2.S1_x_at11/111+2983116..2986082RNA recognition motif family protein, expressed
LOC_Os01g06290Os.18216.1.S1_at10/111+2983116..2986082RNA recognition motif family protein, expressed
LOC_Os01g06300Os.14919.1.S1_at3/111+2988199..2994119transposon protein, putative, Mutator sub-class
LOC_Os01g06300OsAffx.29313.1.S1_at1/111+2988199..2994119transposon protein, putative, Mutator sub-class
LOC_Os01g06310Os.6389.1.S1_at11/111+2996395..2997985expressed protein
LOC_Os01g06320Os.31652.1.S1_at11/111+3000662..3002530myb-like DNA-binding domain, SHAQKYF class family protein, expressed
LOC_Os01g06320Os.31652.2.S1_x_at10/111+3000662..3002530myb-like DNA-binding domain, SHAQKYF class family protein, expressed
LOC_Os01g06330NANA1+3007213..3008966hypothetical protein
LOC_Os01g06340Os.31008.1.S1_at11/111+3010717..3011553expressed protein

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Gene Ontology Classification
GO idTypeName
GO:0000245biological_processspliceosome assembly
GO:0000398biological_processnuclear mRNA splicing, via spliceosome
GO:0016607cellular_componentnuclear speck
GO:0003676molecular_functionnucleic acid binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.18216.1.S1_at--23--6031Chr01:2983338..2983362 (25 bp)
GAGAGGAAGCACATCCCCTTAAATG
LOC_Os01g06290
Os.18216.1.S1_at--1010--7651Chr01:2983304..2983328 (25 bp)
GGGATGTATCAGTCTTAAAGTTTAT
LOC_Os01g06290
Os.18216.1.S1_at--851--7131Chr01:2983250..2983274 (25 bp)
GTCATATCTATGAACCTGTTGGGAT
LOC_Os01g06290
Os.18216.1.S1_at--540--2631Chr01:2983238..2983262 (25 bp)
AACCTGTTGGGATTTGAGTGGATCT
LOC_Os01g06290
Os.18216.1.S1_at--284--6131Chr01:2983223..2983247 (25 bp)
GAGTGGATCTGTATCCTATTTGTTA
LOC_Os01g06290
Os.18216.1.S1_at--1065--6891Chr01:2983213..2983237 (25 bp)
GTATCCTATTTGTTATTGACGCCTT
LOC_Os01g06290
Os.18216.1.S1_at--804--51Chr01:2983199..2983223 (25 bp)
ATTGACGCCTTTCATAAGTTGATAG
LOC_Os01g06290
Os.18216.1.S1_at--72--1251Chr01:2983183..2983207 (25 bp)
AGTTGATAGACCATGCCATCTGTTG
LOC_Os01g06290
Os.18216.1.S1_at--214--5851Chr01:2983175..2983199 (25 bp)
GACCATGCCATCTGTTGGTTGTACT
LOC_Os01g06290
Os.18216.1.S1_at--649--6611Chr01:2983162..2983186 (25 bp)
GTTGGTTGTACTCCGAACTGCATAA
LOC_Os01g06290
Os.18216.1.S1_at--989--2491NONE
AACATCGCCCTAGCCATGATTAGAT
NONE
Target Sequence 
GAGAGGAAGCACATCCCCTTAAATGAGATGTTAGGGGATGTATCAGTCTTAAAGTTTATGAATCAATTTAAACCTGTTGG
AGATTTTAGTCATATCTATGAACCTGTTGGGATTTGAGTGGATCTGTATCCTATTTGTTATTGACGCCTTTCATAAGTTG
ATAGACCATGCCATCTGTTGGTTGTACTCCGAACTGCATAAAATGGAATTTGCGNCCCNCCGCGGTTTCTGGAANAAAAA
AAAACATCGCCCTAGCCATGATTAGAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.18216.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis