Browse Element(s) Details


OsAffx.10935.1.S1_x_at

Description tigr:9629.m00551
TID=OsAffx.10935.1
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Plant disease resistance response protein, putative
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g0625011/11Dirigent-like protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g06170Os.28943.1.S1_x_at2/111+2938130..2941180retrotransposon protein, putative, unclassified
LOC_Os01g06180NANA1+2941800..2944537transposon protein, putative, unclassified
LOC_Os01g06200NANA1+2946899..2949815retrotransposon protein, putative, unclassified
LOC_Os01g06210Os.1899.1.S1_at1/111+2951316..2952306PrMC3, putative
LOC_Os01g06220Os.33885.1.S1_at11/111+2953968..2955241PrMC3, putative, expressed
LOC_Os01g06230NANA1+2957996..2958271Auxin responsive protein
LOC_Os01g06240OsAffx.23133.1.S1_at11/111+2959224..2961719D-mannose binding lectin family protein, expressed
LOC_Os01g06250OsAffx.10935.1.S1_x_at11/111+2963126..2964148Dirigent-like protein
LOC_Os01g06250OsAffx.10935.1.S1_at11/111+2963126..2964148Dirigent-like protein
LOC_Os01g06260OsAffx.10558.2.S1_s_at11/111+2965956..2967533hypothetical protein
LOC_Os01g06260OsAffx.10558.2.S1_at11/111+2965956..2967533hypothetical protein
LOC_Os01g06260OsAffx.10558.1.S1_x_at9/111+2965956..2967533hypothetical protein
LOC_Os01g06260OsAffx.10558.1.S1_at5/111+2965956..2967533hypothetical protein
LOC_Os01g06270Os.19218.1.S1_x_at11/111+2967932..2976115expressed protein
LOC_Os01g06270Os.37997.1.S1_s_at11/111+2967932..2976115expressed protein
LOC_Os01g06270OsAffx.10936.1.S1_x_at10/111+2967932..2976115expressed protein
LOC_Os01g06280Os.33613.1.S1_at11/111+2979344..2982962Protein kinase domain containing protein, expressed
LOC_Os01g06290Os.18216.2.S1_x_at11/111+2983116..2986082RNA recognition motif family protein, expressed
LOC_Os01g06290Os.18216.1.S1_at10/111+2983116..2986082RNA recognition motif family protein, expressed
LOC_Os01g06300Os.14919.1.S1_at3/111+2988199..2994119transposon protein, putative, Mutator sub-class
LOC_Os01g06300OsAffx.29313.1.S1_at1/111+2988199..2994119transposon protein, putative, Mutator sub-class

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Gene Ontology Classification
GO idTypeName
GO:0006952biological_processdefense response
GO:0009807biological_processlignan biosynthesis
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.10935.1.S1_x_at--472--7311Chr01:2963582..2963606 (25 bp)
GTGCTGCCGCTGAACAGCGGCGTCA
LOC_Os01g06250
OsAffx.10935.1.S1_x_at--946--9711Chr01:2963604..2963628 (25 bp)
TCAACGTCAAGAGCGGCGCGGCCGG
LOC_Os01g06250
OsAffx.10935.1.S1_x_at--493--4431Chr01:2963687..2963711 (25 bp)
GCCTTCACGTCGAACAGCAACAACA
LOC_Os01g06250
OsAffx.10935.1.S1_x_at--301--1451Chr01:2963769..2963793 (25 bp)
AGAAGCTCCTCTTCGGGACCATGAC
LOC_Os01g06250
OsAffx.10935.1.S1_x_at--902--9251Chr01:2963775..2963799 (25 bp)
TCCTCTTCGGGACCATGACGGTGGT
LOC_Os01g06250
OsAffx.10935.1.S1_x_at--449--6731Chr01:2963860..2963884 (25 bp)
GTTCTACATCGCGAGCTCCGAGGAG
LOC_Os01g06250
OsAffx.10935.1.S1_x_at--437--7471Chr01:2963903..2963927 (25 bp)
GTGGTGACGGCGATGTTCAAGGAAG
LOC_Os01g06250
OsAffx.10935.1.S1_x_at--1079--8371Chr01:2963927..2963951 (25 bp)
GGCGAGTTCGCCGACAGCATCAGCT
LOC_Os01g06250
OsAffx.10935.1.S1_x_at--618--2151Chr01:2963940..2963964 (25 bp)
ACAGCATCAGCTTCTTCGGCGTGCA
LOC_Os01g06250
OsAffx.10935.1.S1_x_at--716--1771Chr01:2963964..2963988 (25 bp)
ACCGCACGGCGGACTCGGAGTCGCA
LOC_Os01g06250
OsAffx.10935.1.S1_x_at--137--10651Chr01:2964017..2964041 (25 bp)
TTCGCCGGTGTGAAGGGATTCGCCA
LOC_Os01g06250
Target Sequence 
GTGCTGCCGCTGAACAGCGGCGTCAACGTCAAGAGCGGCGCGGCCGGCGCCATCGACAACAACAACATCCCCTTCCTCAC
CGGCCTCGGCGGCGCCACCAACGCCGCCTTCACGTCGAACAGCAACAACAACAACAACGGCGTGCCCGTCTTCGCCGGCG
GCAGCCTCCCGCAGGGGACCACGCTCCAGAAGCTCCTCTTCGGGACCATGACGGTGGTCGACGACGAGCTGACGGAGGCG
CCGGGGCTGGGCTCGCCGGCGGTGGGCAGGGCGCAGGGGTTCTACATCGCGAGCTCCGAGGAGGGCGTGAGCCAGACGGT
GGTGGTGACGGCGATGTTCAAGGAAGGCGAGTTCGCCGACAGCATCAGCTTCTTCGGCGTGCACCGCACGGCGGACTCGG
AGTCGCACCTCGCCGTCGTCGGCGGCACAGGGAAGTTCGCCGGTGTGAAGGGATTCGCCA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.10935.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis