Browse Element(s) Details


Os.18229.3.S1_x_at

Description gb:NM_189318.1
DB_XREF= gi:34905719
GEN=OJ1294_F06.1
TID=Os.18229.3
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
UG=Os.18229 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) OJ1294_F06.1 (OJ1294_F06.1), mRNA
DEF=Oryza sativa (japonica cultivar-group) OJ1294_F06.1 (OJ1294_F06.1), mRNA.
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g7262011/11hypothetical protein
LOC_Os07g290601/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g72590NANA1+42437325..42437531hypothetical protein
LOC_Os01g72600OsAffx.2464.1.S1_at11/111+42449501..42450490Armadillo/beta-catenin-like repeat family protein, expressed
LOC_Os01g72610Os.18229.1.S1_at11/111+42455186..42457054glycosyltransferase, putative, expressed
LOC_Os01g72620OsAffx.24015.1.S1_at11/111+42461140..42462786hypothetical protein
LOC_Os01g72620Os.18229.3.S1_x_at11/111+42461140..42462786hypothetical protein
LOC_Os01g72620Os.18229.1.S1_at3/111+42461140..42462786hypothetical protein
LOC_Os01g72630Os.34199.1.S1_at11/111+42465498..42469884expressed protein
LOC_Os01g72630Os.34199.2.S1_s_at11/111+42465498..42469884expressed protein
LOC_Os01g72650Os.8818.2.S1_x_at11/111+42476558..42483700RNA recognition motif family protein, expressed
LOC_Os01g72650Os.8818.1.S1_at11/111+42476558..42483700RNA recognition motif family protein, expressed
LOC_Os01g72660OsAffx.11831.1.S1_at11/111+42487651..42488127hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0004722molecular_functionprotein serine/threonine phosphatase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.18229.3.S1_x_at--1011--7212Chr07:17037229..17037248 (20 bp)
GTCGAGCTAGACATCAACCCTATGT
LOC_Os07g29060
Os.18229.3.S1_x_at--312--9171Chr01:42462185..42462209 (25 bp)
TGCCCACTGATTTGCTTCTATGCAG
LOC_Os01g72620
Os.18229.3.S1_x_at--709--8551Chr01:42462160..42462184 (25 bp)
TGGAGTTCCAGCTATGCAACCGCAT
LOC_Os01g72620
Os.18229.3.S1_x_at--156--1751Chr01:42461999..42462103 (25 bp)
ACCTCCACAAGGTCGATCGTCGGAA
LOC_Os01g72620
Os.18229.3.S1_x_at--52--7371Chr01:42461964..42461988 (25 bp)
GTGACTGATTGGACTTACTACCATC
LOC_Os01g72620
Os.18229.3.S1_x_at--642--4051Chr01:42461863..42461887 (25 bp)
CGATGCATACTTGGCGTGGCTCCAT
LOC_Os01g72620
Os.18229.3.S1_x_at--1083--7531Chr01:42461848..42461872 (25 bp)
GTGGCTCCATAGGAACTATCGTCTT
LOC_Os01g72620
Os.18229.3.S1_x_at--89--4091Chr01:42461797..42461821 (25 bp)
CGACATAGCGGACGACCCTGAAGAT
LOC_Os01g72620
Os.18229.3.S1_x_at--683--6971Chr01:42461755..42461779 (25 bp)
GTACGACACTCGAACCCGTGAAGGT
LOC_Os01g72620
Os.18229.3.S1_x_at--299--8911Chr01:42461722..42461746 (25 bp)
TGAGACAGGACCTCTTCGCGATAGA
LOC_Os01g72620
Os.18229.3.S1_x_at--449--5451Chr01:42461570..42461594 (25 bp)
GAACGGCTCCCCAGACTGGATGGAT
LOC_Os01g72620
Target Sequence 
GTCGAGCTAGACATCAACCCTATGTGCCACATAGAGGATACGTTGCAAACCTTGCGGTGCCCACTGATTTGCTTCTATGC
AGTGGAGTTCCAGCTATGCAACCGCATAATGCGGCAGTTCGGGAGGCTTCAAACAATCCCGCACCGTTTCTCCACTAGTA
TCGACCTCCACAAGGTCGATCGTCGGAAGAACAAGAAGGTGACTGATTGGACTTACTACCATCAAGATCATATCACGCAA
TGGGAGAAATTCGATGAGAACGGAGTACCGGACCAAGGTCAGCACAACAGGACGAAGTTCGATGCATACTTGGCGTGGCT
CCATAGGAACTATCGTCTTGTCCTACGCCCGGCCTGGACGCTAGCCGACATAGCGGACGACCCTGAAGATGTGGAGGAGC
AGAACGAGTACGACACTCGAACCCGTGAAGGTACCACGGTTGAGACAGGACCTCTTCGCGATAGAGTGGCACAAGAGCTC
TTGCGGACCGTCAACGACGCGGGAGTGGCGCTTGGAACGGCTCCCCAGACTGGATGGAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.18229.3.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis