Browse Element(s) Details


Os.18249.1.S1_at

Description gb:AF464932.1
DB_XREF= gi:33317835
GEN=ALDH1
TID=Os.18249.1
CNT=7
FEA=FLmRNA
TIER=FL
STK=2
UG=Os.18249 (NCBI UniGene Cluster)
DEF=Oryza sativa (indica cultivar-group) aldehyde dehydrogenase (ALDH1) mRNA, complete cds.
PROD=aldehyde dehydrogenase
FL= gb:AF464932.1 gb:AK071169.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g4572010/11aldehyde dehydrogenase family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g45670Os.9278.1.S1_s_at11/114+26796479..26800409Variant SH3 domain containing protein, expressed
LOC_Os04g45690Os.5890.1.S1_at11/114+26808184..26810412B-box zinc finger family protein, expressed
LOC_Os04g45700OsAffx.4101.1.S1_at11/114+26813732..26815736COBRA-like protein 6 precursor, putative, expressed
LOC_Os04g45710OsAffx.4102.1.S1_at9/114+26816354..26821348hypothetical protein
LOC_Os04g45720Os.18249.1.S1_at10/114+26824892..26829817aldehyde dehydrogenase family protein, expressed
LOC_Os04g45730Os.48817.1.A1_at10/114+26839293..26841021Protein kinase domain containing protein, expressed
LOC_Os04g45740OsAffx.26475.1.S1_at11/114+26847599..26848832hypothetical protein

Select all/Clear all

Gene Ontology Classification
GO idTypeName
GO:0009414biological_processresponse to water deprivation
GO:0009737biological_processresponse to abscisic acid stimulus
GO:0009536cellular_componentplastid
GO:0004028molecular_function3-chloroallyl aldehyde dehydrogenase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.18249.1.S1_at--656--3331Chr04:26825631..26825655 (25 bp)
CACTGAGGCGCCGAATCGTCGAGGA
LOC_Os04g45720
Os.18249.1.S1_at--245--5771Chr04:26825594..26825618 (25 bp)
GAGCGTTACGTTCAACGACGCAGTT
LOC_Os04g45720
Os.18249.1.S1_at--644--3071NONE
AATACGGGATCGATTCGCTGCCGTT
NONE
Os.18249.1.S1_at--1044--991Chr04:26825281..26825305 (25 bp)
AGGATACCTTATCGAGCTGACGGCC
LOC_Os04g45720
Os.18249.1.S1_at--194--7851Chr04:26825255..26825279 (25 bp)
GGTACCCGCCGTGGGATGACAGCAA
LOC_Os04g45720
Os.18249.1.S1_at--173--2811Chr04:26825232..26825256 (25 bp)
AAGATCTCCATGATGCGACAGCTCT
LOC_Os04g45720
Os.18249.1.S1_at--65--9151Chr04:26825219..26825243 (25 bp)
TGCGACAGCTCTACCGTTACAATTA
LOC_Os04g45720
Os.18249.1.S1_at--510--6771Chr04:26825204..26825228 (25 bp)
GTTACAATTACGTCGGATTCGTCTT
LOC_Os04g45720
Os.18249.1.S1_at--597--9791Chr04:26825180..26825204 (25 bp)
TAACCTTCCTCGGTCTAAAGAAGTG
LOC_Os04g45720
Os.18249.1.S1_at--501--2311Chr04:26825112..26825136 (25 bp)
AAAGTGAGTGCATTTAGCCCAAGAG
LOC_Os04g45720
Os.18249.1.S1_at--1093--2931Chr04:26824979..26825003 (25 bp)
AATGCGCTACCTGTAATTTACGTTT
LOC_Os04g45720
Target Sequence 
CACTGAGGCGCCGAATCGTCGAGGAGACGTCGTCGGGGAGCGTTACGTTCAACGACGCAGTTGTACAATACGGGATCGAT
TCGCTGCCGTTCGGCGGCGTCGGCGANAGCGGATTCGGGCAGTACCACGGCAAGTACTCCTTCGAGATGTTCAGCCACAA
GAAGGCGGTTCTGACGAGAGGATACCTTATCGAGCTGACGGCCAGGTACCCGCCGTGGGATGACAGCAAGATCTCCATGA
TGCGACAGCTCTACCGTTACAATTACGTCGGATTCGTCTTAACCTTCCTCGGTCTAAAGAAGTGAAAATTTGGTGGGAAG
GAATTGGTGATNGCTTTTGTGGAGTTCAAAGTGAGTGCATTTAGCCCAAGAGACTACTGATGAGAATAAATATAGACTTA
TATCGCTTAGTGAATAAGAACAAGATTTGCAGTTGCTAGTATAAAGCAGCAAAAATGTACTGCCTGCATTATATAAGAAA
AATGCGCTACCTGTAATTTACGTTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.18249.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis