Browse Element(s) Details


Os.18261.1.S1_at

Description gb:AK065211.1
DB_XREF= gi:32975229
TID=Os.18261.1
CNT=6
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.18261 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013002F23, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013002F23, full insert sequence.
FL= gb:AK065211.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g387804/11Protein phosphatase 2C containing protein, expressed
LOC_Os02g386901/11Protein phosphatase 2C containing protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g38730OsAffx.12397.1.S1_at11/112+23402441..23403366hypothetical protein
LOC_Os02g38730Os.22646.1.S1_x_at1/112+23402441..23403366hypothetical protein
LOC_Os02g38740Os.57171.1.S1_at11/112+23410133..23410909expressed protein
LOC_Os02g38750Os.9122.1.S1_at5/112+23411730..23413216hypothetical protein
LOC_Os02g38760NANA2+23415018..23418833hypothetical protein
LOC_Os02g38770NANA2+23420777..23421778hypothetical protein
LOC_Os02g38780OsAffx.24637.5.S1_x_at5/112+23426755..23436505Protein phosphatase 2C containing protein, expressed
LOC_Os02g38780Os.18261.1.S1_at4/112+23426755..23436505Protein phosphatase 2C containing protein, expressed
LOC_Os02g38780Os.5051.1.S1_x_at2/112+23426755..23436505Protein phosphatase 2C containing protein, expressed
LOC_Os02g38780Os.13531.1.S1_x_at1/112+23426755..23436505Protein phosphatase 2C containing protein, expressed
LOC_Os02g38790OsAffx.31174.5.S1_x_at7/112+23438197..23442968expressed protein
LOC_Os02g38790OsAffx.31174.4.S1_x_at4/112+23438197..23442968expressed protein
LOC_Os02g38790Os.29932.2.S1_x_at1/112+23438197..23442968expressed protein
LOC_Os02g38800Os.13531.1.S1_x_at11/112+23445846..2344882726S proteasome non-ATPase regulatory subunit 6, putative, expressed
LOC_Os02g38810Os.18441.1.S1_at11/112+23455595..2345997726S proteasome non-ATPase regulatory subunit 6, putative, expressed
LOC_Os02g38820Os.14404.1.S1_at11/112+23460100..23462169expressed protein

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Gene Ontology Classification
GO idTypeName
GO:0009738biological_processabscisic acid mediated signaling
GO:0005634cellular_componentnucleus
GO:0005730cellular_componentnucleolus
GO:0005737cellular_componentcytoplasm
GO:0008287cellular_componentprotein serine/threonine phosphatase complex
GO:0015071molecular_functionprotein phosphatase type 2C activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.18261.1.S1_at--104--2191Chr02:23436144..23436168 (25 bp)
ACACTGACAGCCACACCGGCGATGA
LOC_Os02g38780
Os.18261.1.S1_at--270--7751Chr02:23436322..23436346 (25 bp)
GGTGTCGTTGTCGACTGCAACCATC
LOC_Os02g38780
Os.18261.1.S1_at--597--8131Chr02:23436355..23436379 (25 bp)
GGACAACTACTTCTTCATTAACACC
LOC_Os02g38780
Os.18261.1.S1_at--1036--3291Chr02:23436458..23436482 (25 bp)
GCCAGTTCCGGTCTTTCCGATTGGG
LOC_Os02g38780
Os.18261.1.S1_at--856--3151Chr02:23436498..23436522 (25 bp)
AATTCTGATCCTGTTAGTGGTAGAC
NONE
Os.18261.1.S1_at--580--7071Chr02:23436525..23436549 (25 bp)
GTAATAGCACCGACCCGTTGATAGT
NONE
Os.18261.1.S1_at--671--10051Chr02:23436552..23436576 (25 bp)
TAGTTTGGTTGTGCTACTTTGCTAG
NONE
Os.18261.1.S1_at--149--2031Chr02:23436567..23436591 (25 bp)
ACTTTGCTAGACTGAGACACCTTGA
NONE
Os.18261.1.S1_at--1065--6811Chr02:23436599..23436623 (25 bp)
GTTTACGAATCATCTCTAGCCTTTT
NONE
Os.18261.1.S1_at--884--451Chr02:23436610..23436634 (25 bp)
ATCTCTAGCCTTTTTAGTTCTGAAG
NONE
Os.18261.1.S1_at--321--453Chr02:23436642..23436666 (25 bp)
ATCTAGTGATGCTTTTGTTGATCTT
NONE
Target Sequence 
ACACTGACAGCCACACCGGCGATGATGTCGACAACAACGACCCCGCCAACGAGGTTGATCCCACTGCCAATGCCGGGTCT
GATGACAGCAACACCAGCGATGAGGTCAAGGTCGACGCCACTGCCACTGCCGTCGGCAGCAGCAGTACCACCGCCGTGGC
TGCCGACGAAGCCACCGTGGTGTCGTTGTCGACTGCAACCATCACCATTGTGGACAACTACTTCTTCATTAACACCAGCG
AGGAGGTTGATCCCACTGCCAATGCCGGGTCTGACGACAGCAACACCGGCGACGAGGTCAAGGTCGACGCCACTGCCAGT
TCCGGTCTTTCCGATTGGGAACTTATATATTCTGAATTCTGATCCTGTTAGTGGTAGACGAGTAATAGCACCGACCCGTT
GATAGTAGTAGTTTGGTTGTGCTACTTTGCTAGACTGAGACACCTTGAATTAATTGTTTACGAATCATCTCTAGCCTTTT
TAGTTCTGAAGGTGATTGATCTAGTGATGCTTTTGTTGATCTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.18261.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis