Browse Element(s) Details


OsAffx.12397.1.S1_at

Description tigr:9630.m03717
TID=OsAffx.12397.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g3873011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g38680Os.5051.1.S1_x_at8/112+23372218..23378555hypothetical protein
LOC_Os02g38680Os.5051.1.S1_at3/112+23372218..23378555hypothetical protein
LOC_Os02g38690OsAffx.24637.3.S1_x_at4/112+23379495..23385971Protein phosphatase 2C containing protein
LOC_Os02g38690Os.18261.1.S1_at1/112+23379495..23385971Protein phosphatase 2C containing protein
LOC_Os02g38700OsAffx.26041.4.S1_s_at11/112+23386480..23390994hAT family dimerisation domain containing protein
LOC_Os02g38700OsAffx.20052.1.S1_x_at1/112+23386480..23390994hAT family dimerisation domain containing protein
LOC_Os02g38710Os.49987.1.S1_at11/112+23392528..23398849Protein phosphatase 2C containing protein, expressed
LOC_Os02g38710OsAffx.24637.3.S1_x_at1/112+23392528..23398849Protein phosphatase 2C containing protein, expressed
LOC_Os02g38720Os.54542.1.S1_at2/112+23399483..23400628F-box domain containing protein
LOC_Os02g38720OsAffx.6361.1.S1_at1/112+23399483..23400628F-box domain containing protein
LOC_Os02g38730OsAffx.12397.1.S1_at11/112+23402441..23403366hypothetical protein
LOC_Os02g38730Os.22646.1.S1_x_at1/112+23402441..23403366hypothetical protein
LOC_Os02g38740Os.57171.1.S1_at11/112+23410133..23410909expressed protein
LOC_Os02g38750Os.9122.1.S1_at5/112+23411730..23413216hypothetical protein
LOC_Os02g38760NANA2+23415018..23418833hypothetical protein
LOC_Os02g38770NANA2+23420777..23421778hypothetical protein
LOC_Os02g38780OsAffx.24637.5.S1_x_at5/112+23426755..23436505Protein phosphatase 2C containing protein, expressed
LOC_Os02g38780Os.18261.1.S1_at4/112+23426755..23436505Protein phosphatase 2C containing protein, expressed
LOC_Os02g38780Os.5051.1.S1_x_at2/112+23426755..23436505Protein phosphatase 2C containing protein, expressed
LOC_Os02g38780Os.13531.1.S1_x_at1/112+23426755..23436505Protein phosphatase 2C containing protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.12397.1.S1_at--126--9271Chr02:23402503..23402527 (25 bp)
TCCTCTGTCTCCGAGCAAGAAGAGA
LOC_Os02g38730
OsAffx.12397.1.S1_at--1148--3771Chr02:23402505..23402529 (25 bp)
CTCTGTCTCCGAGCAAGAAGAGAGC
LOC_Os02g38730
OsAffx.12397.1.S1_at--632--3871Chr02:23402507..23402531 (25 bp)
CTGTCTCCGAGCAAGAAGAGAGCGC
LOC_Os02g38730
OsAffx.12397.1.S1_at--315--7171Chr02:23402509..23402533 (25 bp)
GTCTCCGAGCAAGAAGAGAGCGCCG
LOC_Os02g38730
OsAffx.12397.1.S1_at--848--9491Chr02:23402510..23402534 (25 bp)
TCTCCGAGCAAGAAGAGAGCGCCGG
LOC_Os02g38730
OsAffx.12397.1.S1_at--371--1491Chr02:23402516..23402537 (22 bp)
AGCAAGAAGAGAGCGCCGGAAGTCT
LOC_Os02g38730
OsAffx.12397.1.S1_at--737--2771Chr02:23402522..23402666 (25 bp)
AAGAGAGCGCCGGAAGTCTCATTTG
LOC_Os02g38730
OsAffx.12397.1.S1_at--343--1351Chr02:23402523..23402667 (25 bp)
AGAGAGCGCCGGAAGTCTCATTTGG
LOC_Os02g38730
OsAffx.12397.1.S1_at--156--6011Chr02:23402524..23402668 (25 bp)
GAGAGCGCCGGAAGTCTCATTTGGA
LOC_Os02g38730
OsAffx.12397.1.S1_at--745--1371Chr02:23402525..23402669 (25 bp)
AGAGCGCCGGAAGTCTCATTTGGAT
LOC_Os02g38730
OsAffx.12397.1.S1_at--1096--5871Chr02:23402526..23402670 (25 bp)
GAGCGCCGGAAGTCTCATTTGGATA
LOC_Os02g38730
Target Sequence 
TCCTCTGTCTCCGAGCAAGAAGAGAGCGCCGGAAGTCTCATTTGGATA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.12397.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis