Browse Element(s) Details


Os.49987.1.S1_at

Description gb:AK119492.1
DB_XREF= gi:37989115
TID=Os.49987.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.49987 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:001-134-D06, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-134-D06, full insert sequence.
FL= gb:AK119492.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g3871011/11Protein phosphatase 2C containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g38670NANA2+23366009..23369150retrotransposon protein, putative, unclassified
LOC_Os02g38680Os.5051.1.S1_x_at8/112+23372218..23378555hypothetical protein
LOC_Os02g38680Os.5051.1.S1_at3/112+23372218..23378555hypothetical protein
LOC_Os02g38690OsAffx.24637.3.S1_x_at4/112+23379495..23385971Protein phosphatase 2C containing protein
LOC_Os02g38690Os.18261.1.S1_at1/112+23379495..23385971Protein phosphatase 2C containing protein
LOC_Os02g38700OsAffx.26041.4.S1_s_at11/112+23386480..23390994hAT family dimerisation domain containing protein
LOC_Os02g38700OsAffx.20052.1.S1_x_at1/112+23386480..23390994hAT family dimerisation domain containing protein
LOC_Os02g38710Os.49987.1.S1_at11/112+23392528..23398849Protein phosphatase 2C containing protein, expressed
LOC_Os02g38710OsAffx.24637.3.S1_x_at1/112+23392528..23398849Protein phosphatase 2C containing protein, expressed
LOC_Os02g38720Os.54542.1.S1_at2/112+23399483..23400628F-box domain containing protein
LOC_Os02g38720OsAffx.6361.1.S1_at1/112+23399483..23400628F-box domain containing protein
LOC_Os02g38730OsAffx.12397.1.S1_at11/112+23402441..23403366hypothetical protein
LOC_Os02g38730Os.22646.1.S1_x_at1/112+23402441..23403366hypothetical protein
LOC_Os02g38740Os.57171.1.S1_at11/112+23410133..23410909expressed protein
LOC_Os02g38750Os.9122.1.S1_at5/112+23411730..23413216hypothetical protein
LOC_Os02g38760NANA2+23415018..23418833hypothetical protein
LOC_Os02g38770NANA2+23420777..23421778hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0005634cellular_componentnucleus
GO:0005730cellular_componentnucleolus
GO:0005737cellular_componentcytoplasm
GO:0008287cellular_componentprotein serine/threonine phosphatase complex
GO:0015071molecular_functionprotein phosphatase type 2C activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.49987.1.S1_at--1157--8951Chr02:23398266..23398290 (25 bp)
TGACACTGGCAGCTACACCGGCGAC
LOC_Os02g38710
Os.49987.1.S1_at--786--5631Chr02:23398357..23398381 (25 bp)
GACACCACCGTTGCTGACAACAATG
LOC_Os02g38710
Os.49987.1.S1_at--573--3031Chr02:23398378..23398402 (25 bp)
AATGCCAGTGGCGTTGCTGACAGCA
LOC_Os02g38710
Os.49987.1.S1_at--449--4071Chr02:23398584..23398608 (25 bp)
CGAGGGCACGGCTCCTGATGACAGC
LOC_Os02g38710
Os.49987.1.S1_at--615--6132Chr02:23398609..23398633 (25 bp)
GAGGGCAGCCCGTAGATGCATGATT
LOC_Os02g38710
Os.49987.1.S1_at--13--2791Chr02:23398641..23398665 (25 bp)
AAGAGGTCACCGGTTCATTACAGCT
LOC_Os02g38710
Os.49987.1.S1_at--657--2151Chr02:23398660..23398684 (25 bp)
ACAGCTTCCACTCAATTTTGTCCAA
LOC_Os02g38710
Os.49987.1.S1_at--206--8671Chr02:23398696..23398720 (25 bp)
TGTGTGATGATGCATGCACCACTGC
LOC_Os02g38710
Os.49987.1.S1_at--183--5091Chr02:23398711..23398735 (25 bp)
GCACCACTGCATTCGAGGGATGTTA
LOC_Os02g38710
Os.49987.1.S1_at--661--6911Chr02:23398783..23398807 (25 bp)
GTAGTTGGTTTCTGCTACCTTGTTT
LOC_Os02g38710
Os.49987.1.S1_at--1027--10411Chr02:23398813..23398837 (25 bp)
TTATGACTCCTGGTTGGCTGGGTAC
LOC_Os02g38710
Target Sequence 
TGACACTGGCAGCTACACCGGCGACGAGATCAAGGTCGACGACAGCACCAGCGGCAGTGCCAGGGGTGACAGCGGCGAGC
TCGTCAACAACGACACCACCGTTGCTGACAACAATGCCAGTGGCGTTGCTGACAGCACCACCGTCGGCGACGAGGTCGAT
CCCACTGCCACTGTCGCGGCCGACGACAGCAACACCGGCGACAAGGTCGATCCCCCTGCCATCACCAAAGCCACGGCCGA
CAGCAACACCAGCGGCGAGGTCGACGTCGACGCCACTGCCACTGCCACTGCCAGCGCCAGCGCCGCCGTGGCTGATGACG
AGGGCACGGCTCCTGATGACAGCGAGGGCAGCCCGTAGATGCATGATTCAGAAGAAAGAGGTCACCGGTTCATTACAGCT
TCCACTCAATTTTGTCCAAGACGGAGATGATGTGTGATGATGCATGCACCACTGCATTCGAGGGATGTTACTGATCATAG
GTAGTAGTAGTAGAACTAATGCATTGATAGGATCGGAGTAGTTGGTTTCTGCTACCTTGTTTTTGGTTTATGACTCCTGG
TTGGCTGGGTAC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.49987.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis