Browse Element(s) Details


Os.5051.1.S1_at

Description gb:AK068111.1
DB_XREF= gi:32978129
TID=Os.5051.1
CNT=9
FEA=FLmRNA
TIER=FL
STK=0
UG=Os.5051 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013132M15, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013132M15, full insert sequence.
FL= gb:AK068111.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g386803/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g38640Os.45173.1.S1_x_at5/112+23348757..23350688retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os02g38650OsAffx.20733.1.S1_x_at1/112+23351934..23356443retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os02g38660NANA2+23359589..23365378retrotransposon protein, putative, unclassified
LOC_Os02g38670NANA2+23366009..23369150retrotransposon protein, putative, unclassified
LOC_Os02g38680Os.5051.1.S1_x_at8/112+23372218..23378555hypothetical protein
LOC_Os02g38680Os.5051.1.S1_at3/112+23372218..23378555hypothetical protein
LOC_Os02g38690OsAffx.24637.3.S1_x_at4/112+23379495..23385971Protein phosphatase 2C containing protein
LOC_Os02g38690Os.18261.1.S1_at1/112+23379495..23385971Protein phosphatase 2C containing protein
LOC_Os02g38700OsAffx.26041.4.S1_s_at11/112+23386480..23390994hAT family dimerisation domain containing protein
LOC_Os02g38700OsAffx.20052.1.S1_x_at1/112+23386480..23390994hAT family dimerisation domain containing protein
LOC_Os02g38710Os.49987.1.S1_at11/112+23392528..23398849Protein phosphatase 2C containing protein, expressed
LOC_Os02g38710OsAffx.24637.3.S1_x_at1/112+23392528..23398849Protein phosphatase 2C containing protein, expressed
LOC_Os02g38720Os.54542.1.S1_at2/112+23399483..23400628F-box domain containing protein
LOC_Os02g38720OsAffx.6361.1.S1_at1/112+23399483..23400628F-box domain containing protein
LOC_Os02g38730OsAffx.12397.1.S1_at11/112+23402441..23403366hypothetical protein
LOC_Os02g38730Os.22646.1.S1_x_at1/112+23402441..23403366hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.5051.1.S1_at--705--652Chr02:23319449..23319910 (25 bp)
ATGCACATCAATGGCTATGACCTGC
NONE
Os.5051.1.S1_at--687--5053Chr02:23378494..23378518 (25 bp)
GCAGCAGGTCGCTACCTTCTAAGCT
LOC_Os02g38680
Os.5051.1.S1_at--763--1034Chr02:23378499..23378523 (25 bp)
AGGTCGCTACCTTCTAAGCTTGATA
LOC_Os02g38680
Os.5051.1.S1_at--768--4133Chr02:23378503..23378527 (25 bp)
CGCTACCTTCTAAGCTTGATAACAT
LOC_Os02g38680
Os.5051.1.S1_at--1--9393Chr02:23378702..23378726 (25 bp)
TCGATTCGTGTGGAGATTGTATGGA
NONE
Os.5051.1.S1_at--825--6593Chr02:23378716..23378740 (25 bp)
GATTGTATGGAAGTTGTCCTGATCC
NONE
Os.5051.1.S1_at--654--8193Chr02:23378724..23378748 (25 bp)
GGAAGTTGTCCTGATCCAGATTAAA
NONE
Os.5051.1.S1_at--363--6633Chr02:23378728..23378752 (25 bp)
GTTGTCCTGATCCAGATTAAAGAGA
NONE
Os.5051.1.S1_at--246--53Chr02:23378753..23378777 (25 bp)
ATTGATGAAAATTGTACCCAGATTG
NONE
Os.5051.1.S1_at--740--2453Chr02:23378760..23378784 (25 bp)
AAAATTGTACCCAGATTGATGAACT
NONE
Os.5051.1.S1_at--1002--6593Chr02:23378773..23378797 (25 bp)
GATTGATGAACTGACTAATAGTTGA
NONE
Target Sequence 
ATGCACATCAATGGCTATGACCTGCCTGCGGCTTCATTCTGAGATGGCCCTTCAGACATCACGAGCACTGGAATCGGCGG
ATCACAGCAAGGCCAGCAGCAGCAGCAGCAGGTCGCTACCTTCTAAGCTTGATAACATCATCATACCATTTGCCAACATG
ATGTGATCGATGTACTAGATTAAGTTGTAAATAAGCATATATTATCTTGCCATGTAATATTAGAAATTCCAGGTCAGCTA
ATTCTGATTAGGCTTGATATTGTCATATTACAGGGTTTTTTTAATCTGGGATTTGAAAATGCTAGAATTTTTGTCGATTC
GTGTGGAGATTGTATGGAAGTTGTCCTGATCCAGATTAAAGAGAATTGATGAAAATTGTACCCAGATTGATGAACTGACT
AATAGTTGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.5051.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis