Browse Element(s) Details


Os.57171.1.S1_at

Description gb:AK111074.1
DB_XREF= gi:32996283
TID=Os.57171.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.57171 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-175-E09, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-175-E09, full insert sequence.
FL= gb:AK111074.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g3874011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g38690OsAffx.24637.3.S1_x_at4/112+23379495..23385971Protein phosphatase 2C containing protein
LOC_Os02g38690Os.18261.1.S1_at1/112+23379495..23385971Protein phosphatase 2C containing protein
LOC_Os02g38700OsAffx.26041.4.S1_s_at11/112+23386480..23390994hAT family dimerisation domain containing protein
LOC_Os02g38700OsAffx.20052.1.S1_x_at1/112+23386480..23390994hAT family dimerisation domain containing protein
LOC_Os02g38710Os.49987.1.S1_at11/112+23392528..23398849Protein phosphatase 2C containing protein, expressed
LOC_Os02g38710OsAffx.24637.3.S1_x_at1/112+23392528..23398849Protein phosphatase 2C containing protein, expressed
LOC_Os02g38720Os.54542.1.S1_at2/112+23399483..23400628F-box domain containing protein
LOC_Os02g38720OsAffx.6361.1.S1_at1/112+23399483..23400628F-box domain containing protein
LOC_Os02g38730OsAffx.12397.1.S1_at11/112+23402441..23403366hypothetical protein
LOC_Os02g38730Os.22646.1.S1_x_at1/112+23402441..23403366hypothetical protein
LOC_Os02g38740Os.57171.1.S1_at11/112+23410133..23410909expressed protein
LOC_Os02g38750Os.9122.1.S1_at5/112+23411730..23413216hypothetical protein
LOC_Os02g38760NANA2+23415018..23418833hypothetical protein
LOC_Os02g38770NANA2+23420777..23421778hypothetical protein
LOC_Os02g38780OsAffx.24637.5.S1_x_at5/112+23426755..23436505Protein phosphatase 2C containing protein, expressed
LOC_Os02g38780Os.18261.1.S1_at4/112+23426755..23436505Protein phosphatase 2C containing protein, expressed
LOC_Os02g38780Os.5051.1.S1_x_at2/112+23426755..23436505Protein phosphatase 2C containing protein, expressed
LOC_Os02g38780Os.13531.1.S1_x_at1/112+23426755..23436505Protein phosphatase 2C containing protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.57171.1.S1_at--641--5091Chr02:23410759..23410783 (25 bp)
GCACCCGTTGTCAAGCGTTATCAAA
LOC_Os02g38740
Os.57171.1.S1_at--1160--4631Chr02:23410773..23410797 (25 bp)
GCGTTATCAAATCCATGCAGGCTCT
LOC_Os02g38740
Os.57171.1.S1_at--779--571Chr02:23410783..23410807 (25 bp)
ATCCATGCAGGCTCTTAAGTCGTGT
LOC_Os02g38740
Os.57171.1.S1_at--423--5012Chr02:23410789..23410813 (25 bp)
GCAGGCTCTTAAGTCGTGTAGTTAT
LOC_Os02g38740
Os.57171.1.S1_at--744--7412Chr02:23410804..23410828 (25 bp)
GTGTAGTTATACAAAGTCACAAACC
LOC_Os02g38740
Os.57171.1.S1_at--229--9692Chr02:23410820..23410844 (25 bp)
TCACAAACCTGTATTATCGACGAAA
LOC_Os02g38740
Os.57171.1.S1_at--910--471Chr02:23410835..23410859 (25 bp)
ATCGACGAAAATCTCGTTCCTTGTA
LOC_Os02g38740
Os.57171.1.S1_at--336--2271Chr02:23410843..23410867 (25 bp)
AAATCTCGTTCCTTGTAGATTGAGA
LOC_Os02g38740
Os.57171.1.S1_at--699--1251Chr02:23410859..23410883 (25 bp)
AGATTGAGATGCATGGCCTCTCTGT
LOC_Os02g38740
Os.57171.1.S1_at--215--872Chr02:23410871..23410895 (25 bp)
ATGGCCTCTCTGTTTACTTTAAACA
LOC_Os02g38740
Os.57171.1.S1_at--830--9872Chr02:23410885..23410909 (25 bp)
TACTTTAAACATCATTCAAGCGGAC
LOC_Os02g38740
Target Sequence 
GCACCCGTTGTCAAGCGTTATCAAATCCATGCAGGCTCTTAAGTCGTGTAGTTATACAAAGTCACAAACCTGTATTATCG
ACGAAAATCTCGTTCCTTGTAGATTGAGATGCATGGCCTCTCTGTTTACTTTAAACATCATTCAAGCGGAC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.57171.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis