Browse Element(s) Details


Os.18265.1.S1_at

Description gb:AK121454.1
DB_XREF= gi:37991077
TID=Os.18265.1
CNT=3
FEA=FLmRNA
TIER=FL
STK=0
UG=Os.18265 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023142P03, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023142P03, full insert sequence.
FL= gb:AK121454.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g3856011/11Pectinesterase family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g38520Os.15136.1.A1_s_at11/114+22671226..22673671expressed protein
LOC_Os04g38520Os.13740.1.A1_at11/114+22671226..22673671expressed protein
LOC_Os04g38530Os.20067.1.S1_at11/114+22674694..22679574Aldose 1-epimerase family protein, expressed
LOC_Os04g38540Os.27545.1.S1_at11/114+22683509..22686551Aldose 1-epimerase family protein, expressed
LOC_Os04g38550Os.24305.1.A1_at9/114+22689474..22690986expressed protein
LOC_Os04g38560Os.18265.1.S1_at11/114+22691327..22693357Pectinesterase family protein, expressed
LOC_Os04g38560OsAffx.23254.1.S1_x_at1/114+22691327..22693357Pectinesterase family protein, expressed
LOC_Os04g38560Os.54835.1.S1_s_at1/114+22691327..22693357Pectinesterase family protein, expressed
LOC_Os04g38570Os.48287.1.S1_at11/114+22695700..22702202multidrug resistance P-glycoprotein, putative, expressed
LOC_Os04g38580NANA4+22706530..22707312hypothetical protein
LOC_Os04g38590Os.55234.1.S1_s_at2/114+22710340..22710689hypothetical protein
LOC_Os04g38600Os.28203.1.S1_a_at11/114+22718006..22719956Glyceraldehyde-3-phosphate dehydrogenase A, chloroplast precursor, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0042545biological_processcell wall modification
GO:0009505cellular_componentcell wall (sensu Magnoliophyta)
GO:0030599molecular_functionpectinesterase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.18265.1.S1_at--1075--831Chr04:22691821..22691845 (25 bp)
ATGGAACGGCGAATTCGCGCTCAAC
LOC_Os04g38560
Os.18265.1.S1_at--810--9531Chr04:22691792..22691816 (25 bp)
TCTACTACGCCGAGTTCAACAACCG
LOC_Os04g38560
Os.18265.1.S1_at--550--1711Chr04:22691751..22691775 (25 bp)
ACCAGCAAGCGCGTCAACTGGAAGG
LOC_Os04g38560
Os.18265.1.S1_at--204--5751Chr04:22691670..22691694 (25 bp)
GACGGCGGGACCTGGCTCAAGTTCA
LOC_Os04g38560
Os.18265.1.S1_at--1007--2051Chr04:22691633..22691657 (25 bp)
ACTTCCTCGGCTTCAAGGTCTAAAG
LOC_Os04g38560
Os.18265.1.S1_at--499--6171Chr04:22691539..22691563 (25 bp)
GAGGATCCGAGGTGACATTCATGCA
LOC_Os04g38560
Os.18265.1.S1_at--17--5691Chr04:22691526..22691550 (25 bp)
GACATTCATGCATGCGTACGTTCGT
LOC_Os04g38560
Os.18265.1.S1_at--802--611Chr04:22691515..22691539 (25 bp)
ATGCGTACGTTCGTGTGTGTACCAA
LOC_Os04g38560
Os.18265.1.S1_at--957--6211Chr04:22691482..22691506 (25 bp)
GATGGCTGAGACGTGCAGGACACCT
LOC_Os04g38560
Os.18265.1.S1_at--1029--7591Chr04:22691427..22691451 (25 bp)
GGGCAGGGCTAACATTTGTGCTTTT
LOC_Os04g38560
Os.18265.1.S1_at--1112--3571Chr04:22691415..22691439 (25 bp)
CATTTGTGCTTTTAACTCTTTCCGG
LOC_Os04g38560
Target Sequence 
ATGGAACGGCGAATTCGCGCTCAACACGCTCTACTACGCCGAGTTCAACAACCGCGGCCCCGGCGCCGGCACCAGCAAGC
GCGTCAACTGGAAGGGGTTCCGCGTCATCGGCCAGAAGGAGGCCGAGCAGTTCACCGCCGGGCCGTTCGTCGACGGCGGG
ACCTGGCTCAAGTTCACCGGCACNCCGCACTTCCTCGGCTTCAAGGTCTAAAGACCCTAGCCCCCTACATGGCGTGAAGG
GTGGGATNCGATGCNTGGACGTNTGCATGGGAGATTTGCACGAGAGGATCCGAGGTGACATTCATGCATGCGTACGTTCG
TGTGTGTACCAAATATGTGTGATGGCTGAGACGTGCAGGACACCTGATCAGGGTGGGCNTGCTGCATGCGCTGGGGGGCA
GGGCTAACATTTGTGCTTTTAACTCTTTCCGG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.18265.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis