Browse Element(s) Details


Os.18293.1.S1_at

Description gb:AK070658.1
DB_XREF= gi:32980682
TID=Os.18293.1
CNT=2
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.18293 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023058E02, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023058E02, full insert sequence.
FL= gb:AK070658.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g260209/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g25980NANA1+14711545..14712117retrotransposon protein, putative, Ty1-copia subclass
LOC_Os01g25990Os.5375.1.S1_at11/111+14712629..14720895esterase/lipase/thioesterase family protein, putative, expressed
LOC_Os01g25990OsAffx.31138.1.S1_x_at2/111+14712629..14720895esterase/lipase/thioesterase family protein, putative, expressed
LOC_Os01g25990Os.54405.1.S1_at1/111+14712629..14720895esterase/lipase/thioesterase family protein, putative, expressed
LOC_Os01g26000OsAffx.23399.1.S1_at10/111+14725434..14730633hydrolase, alpha/beta fold family protein, expressed
LOC_Os01g26010OsAffx.23400.1.S1_at11/111+14731883..14732571hypothetical protein
LOC_Os01g26020Os.18293.1.S1_at9/111+14734782..14737053expressed protein
LOC_Os01g26039Os.17002.1.S1_at11/111+14737314..14746988esterase/lipase/thioesterase family protein, putative, expressed
LOC_Os01g26060OsAffx.23402.1.S1_at10/111+14749764..14751621hypothetical protein
LOC_Os01g26070Os.51354.1.S1_at11/111+14751752..14752362expressed protein
LOC_Os01g26080OsAffx.11209.1.S1_at10/111+14760287..14761591hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.18293.1.S1_at--299--8411Chr01:14736530..14736554 (25 bp)
GGCCCACCTTTACGAGCGCAGGATG
LOC_Os01g26020
Os.18293.1.S1_at--425--5011Chr01:14736547..14736571 (25 bp)
GCAGGATGTTTCCATACCCAGGTGA
LOC_Os01g26020
Os.18293.1.S1_at--682--7291Chr01:14736607..14736631 (25 bp)
GTGCTCTAGGCACCACAATTGGACC
LOC_Os01g26020
Os.18293.1.S1_at--983--1011Chr01:14736635..14736659 (25 bp)
AGGTTTTGCTGATTCCAACATGGAC
LOC_Os01g26020
Os.18293.1.S1_at--1066--2711Chr01:14736706..14736730 (25 bp)
AAGCACAGAAGCTCTGGTTTCGGAT
LOC_Os01g26020
Os.18293.1.S1_at--379--6831Chr01:14736836..14736860 (25 bp)
GTTTCAGCTTGTTAGCCGTCTAGGA
LOC_Os01g26020
Os.18293.1.S1_at--65--2411Chr01:14736893..14736917 (25 bp)
AAACACCTACTTTGCAATCTGGAGA
LOC_Os01g26020
Os.18293.1.S1_at--1011--3111Chr01:14736978..14737002 (25 bp)
AATTTGGTCTTGTTGGGTCATTGCA
LOC_Os01g26020
Os.18293.1.S1_at--1085--7691Chr01:14736992..14737016 (25 bp)
GGGTCATTGCATTCCATCAGTTACA
LOC_Os01g26020
Os.18293.1.S1_at--1155--7851Chr01:14737038..14737062 (25 bp)
GGTATCAGTTACCAGTATCTCCTCG
NONE
Os.18293.1.S1_at--819--10151Chr01:14737053..14737077 (25 bp)
TATCTCCTCGCGTTTCAGTTTTGAA
NONE
Target Sequence 
GGCCCACCTTTACGAGCGCAGGATGTTTCCATACCCAGGTGATGAAGAGGCAGTTGAGGAGTTCATAAAAAGTGGAGGTG
CTCTAGGCACCACAATTGGACCCAAAGGTTTTGCTGATTCCAACATGGACTCTGATAACATGCAGAAACAATTGCAGTCA
AAAAAGTTTGACCAAGAAGCACAGAAGCTCTGGTTTCGGATGAGGAATGAGGTCGTACAAGAACTCCAAGAGAAGGGATN
CGATGTTGAATGAAATTTTACTNCTNCATAANCAGAAATGGAGTAAAGCTGAAGTATGTGCAAATTGTTTCAGCTTGTTA
GCCGTCTAGGAAATTAGGAGCTTAGAATGCACGCAAAATGTTAAAACACCTACTTTGCAATCTGGAGATTTTTTTTTTTT
AATTTGAGAAAGCAATCTGGAGAATCTAGAGAGTTTACTATTCAACTTCAATTTGGTCTTGTTGGGTCATTGCATTCCAT
CAGTTACAGATTTTGTACCTTAAAGATATGGTATCAGTTACCAGTATCTCCTCGCGTTTCAGTTTTGAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.18293.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis