Browse Element(s) Details


Os.18330.1.S3_at

Description gb:AK066219.1
DB_XREF= gi:32976237
TID=Os.18330.1
CNT=13
FEA=FLmRNA
TIER=FL
STK=0
UG=Os.18330 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) unknown protein (OSJNBa0042H09.8), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013052O05, full insert sequence.
FL= gb:AK070955.1 gb:AK068632.1 gb:AK066219.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g4103010/11Agenet domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g40990Os.52326.1.S1_at11/1110+21682883..21684635Flavonol synthase/flavanone 3-hydroxylase, putative, expressed
LOC_Os10g40990Os.28435.5.S1_at2/1110+21682883..21684635Flavonol synthase/flavanone 3-hydroxylase, putative, expressed
LOC_Os10g40990Os.8575.1.S1_at1/1110+21682883..21684635Flavonol synthase/flavanone 3-hydroxylase, putative, expressed
LOC_Os10g41000Os.52220.1.S1_at11/1110+21685261..21689413retrotransposon protein, putative, unclassified, expressed
LOC_Os10g41000Os.51877.1.S1_x_at11/1110+21685261..21689413retrotransposon protein, putative, unclassified, expressed
LOC_Os10g41020Os.7510.1.S1_at11/1110+21690027..21693601oxidoreductase, 2OG-Fe oxygenase family protein, expressed
LOC_Os10g41020Os.7510.1.S2_at11/1110+21690027..21693601oxidoreductase, 2OG-Fe oxygenase family protein, expressed
LOC_Os10g41020Os.51877.1.S1_x_at1/1110+21690027..21693601oxidoreductase, 2OG-Fe oxygenase family protein, expressed
LOC_Os10g41030Os.18330.1.S2_at11/1110+21694510..21706564Agenet domain containing protein, expressed
LOC_Os10g41030Os.18330.1.S1_at11/1110+21694510..21706564Agenet domain containing protein, expressed
LOC_Os10g41030Os.18330.1.S3_at10/1110+21694510..21706564Agenet domain containing protein, expressed
LOC_Os10g41040Os.14119.2.S1_x_at11/1110+21709793..21714041expressed protein
LOC_Os10g41040Os.14119.1.S1_x_at6/1110+21709793..21714041expressed protein
LOC_Os10g41050Os.46506.1.S1_at11/1110+21716848..21718761expressed protein
LOC_Os10g41060Os.46540.1.S1_at11/1110+21725326..21727262expressed protein
LOC_Os10g41070OsAffx.30743.2.S1_x_at11/1110+21729541..21731029Acyltransferase family protein
LOC_Os10g41070OsAffx.30743.2.S1_at11/1110+21729541..21731029Acyltransferase family protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.18330.1.S3_at--1008--2771Chr10:21696451..21696475 (25 bp)
AAGAGTGCTGATTCTACTGAACCCA
LOC_Os10g41030
Os.18330.1.S3_at--314--3271Chr10:21696428..21696452 (25 bp)
CAGAAGGTCGAACCGCCGAATTCAA
LOC_Os10g41030
Os.18330.1.S3_at--576--9671NONE
TCAACCAACCTCACGGTTACTGGAG
NONE
Os.18330.1.S3_at--622--7171Chr10:21695037..21695061 (25 bp)
GTCTGCAGAGTTCCCTTATAGTTTC
LOC_Os10g41030
Os.18330.1.S3_at--466--10391Chr10:21695022..21695046 (25 bp)
TTATAGTTTCCAAAGTTCCAGGCGA
LOC_Os10g41030
Os.18330.1.S3_at--729--5971Chr10:21694851..21694875 (25 bp)
GAGAAAAAGGCTTTGCTGCGCTGTT
LOC_Os10g41030
Os.18330.1.S3_at--936--6611Chr10:21694826..21694850 (25 bp)
GTTGGGATAATTCTCGTTTTGTACA
LOC_Os10g41030
Os.18330.1.S3_at--412--5691Chr10:21694754..21694778 (25 bp)
GACTTCCCCGGAGAAGATGTGCTCA
LOC_Os10g41030
Os.18330.1.S3_at--649--7931Chr10:21694687..21694711 (25 bp)
GGATTTGTACTGGACACTTGTGTTA
LOC_Os10g41030
Os.18330.1.S3_at--234--3971Chr10:21694585..21694609 (25 bp)
CGGTTTAAACTCATCGTCTGTGGTA
LOC_Os10g41030
Os.18330.1.S3_at--605--3651Chr10:21694537..21694561 (25 bp)
CTTCTCCGTCCTTTTGTGGAATTGA
LOC_Os10g41030
Target Sequence 
AAGAGTGCTGATTCTACTGAACCCAGAAGGTCGAACCGCCGAATTCAACCAACCTCACGGTTACTGGAGGGTCTGCAGAG
TTCCCTTATAGTTTCCAAAGTTCCAGGCGAAAAGGGTCCTAGGACTAACTACAGAAGTGCTTCCTCAAGAGGGCGAAACC
TTGGCTGAGAAAAAGGCTTTGCTGCGCTGTTGTTGGGATAATTCTCGTTTTGTACATAACTGGTTAGCTCGATGGAGGCA
AAAGAGGATAGGATTGGAGTAAAGACTTCCCCGGAGAAGATGTGCTCAGGTGTATTATATGCTAGCTTAAGTTAGTGGGG
TTTATTTTTTGGATTTGTACTGGACACTTGTGTTATGTGATGTAGAGTAGACATTAATCATCCAAAAACCACCGTTTAAT
CTGTATGGATACAGCGAAAGAGAAATTGGACACGGTTTAAACTCATCGTCTGTGGTAAACCATTTGACGGATGTATTAAC
CTTCTCCGTCCTTTTGTGGAATTGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.18330.1.S3_at     

Putative homologies in rice

Putative homologies in arabidopsis