Browse Element(s) Details


Os.18336.1.S1_at

Description gb:AK107615.1
DB_XREF= gi:32992824
TID=Os.18336.1
CNT=8
FEA=FLmRNA
TIER=FL
STK=2
UG=Os.18336 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-131-C10, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-131-C10, full insert sequence.
FL= gb:AK107615.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g2858011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g28550NANA2+16883301..16887117retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os02g28560OsAffx.24479.1.S1_at9/112+16897994..16899026hypothetical protein
LOC_Os02g28570OsAffx.2778.1.S1_at11/112+16901844..16906742hypothetical protein
LOC_Os02g28570OsAffx.15255.1.S1_x_at1/112+16901844..16906742hypothetical protein
LOC_Os02g28580Os.18336.1.S1_at11/112+16909659..16913424expressed protein
LOC_Os02g28590OsAffx.24480.1.S1_x_at11/112+16916519..16917191hypothetical protein
LOC_Os02g28590Os.28385.3.S1_x_at1/112+16916519..16917191hypothetical protein
LOC_Os02g28590OsAffx.25784.1.S1_x_at1/112+16916519..16917191hypothetical protein
LOC_Os02g28590OsAffx.19451.3.S1_x_at1/112+16916519..16917191hypothetical protein
LOC_Os02g28600OsAffx.17122.2.S1_at11/112+16918153..16919505F-box domain containing protein
LOC_Os02g28600OsAffx.17122.2.S1_s_at11/112+16918153..16919505F-box domain containing protein
LOC_Os02g28610NANA2+16925097..16925786transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os02g28620NANA2+16928604..16935355retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os02g28630NANA2+16936541..16940466transposon protein, putative, CACTA, En/Spm sub-class

Select all/Clear all

Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.18336.1.S1_at--962--7491Chr02:16912872..16912896 (25 bp)
GTGGTGATGCCTACTATTTCTATGA
LOC_Os02g28580
Os.18336.1.S1_at--678--6711Chr02:16912900..16912924 (25 bp)
GTTCGTCCCATACCGCAAGAAGGAT
LOC_Os02g28580
Os.18336.1.S1_at--715--9191Chr02:16912977..16913001 (25 bp)
TGCCACAAGATAATGCCGTCGCCAT
LOC_Os02g28580
Os.18336.1.S1_at--628--7731Chr02:16913036..16913060 (25 bp)
GGTGTTTACAACTCGTCTGATTACT
LOC_Os02g28580
Os.18336.1.S1_at--169--151Chr02:16913055..16913079 (25 bp)
ATTACTCCTCGGACACTGCTAGCGA
LOC_Os02g28580
Os.18336.1.S1_at--763--2031Chr02:16913097..16913121 (25 bp)
ACTATACCGTTGGTGGTGCCAGCAA
LOC_Os02g28580
Os.18336.1.S1_at--1000--2731Chr02:16913199..16913223 (25 bp)
AAGAACGGTCGCTTAAGTCCCTGCT
LOC_Os02g28580
Os.18336.1.S1_at--274--2851Chr02:16913213..16913237 (25 bp)
AAGTCCCTGCTCTAAGAGTTCTAAT
LOC_Os02g28580
Os.18336.1.S1_at--108--9751Chr02:16913234..16913258 (25 bp)
TAATTCGATCGGTTGTCTGTGGGAC
LOC_Os02g28580
Os.18336.1.S1_at--994--8651Chr02:16913251..16913275 (25 bp)
TGTGGGACAGTTTCAGTTTAGCCGT
LOC_Os02g28580
Os.18336.1.S1_at--591--4251Chr02:16913272..16913296 (25 bp)
CCGTGTTGTCGCTTAATGGCATATC
LOC_Os02g28580
Target Sequence 
GTGGTGATGCCTACTATTTCTATGATATGTTCGTCCCATACCGCAAGAAGGATCGTGGTGGTAGCAGCAGCAAANCAGCA
AGCCGGTGCTGAGGAGAAGGAGATCCTGCCACAAGATAATGCCGTCGCCATGGAAGAGAAAATGGACGGCAAGAAACTGT
ACGATGGTGTTTACAACTCGTCTGATTACTCCTCGGACACTGCTAGCGACGACGAGAGCGACGAAGACTATACCGTTGGT
GGTGCCAGCAAGCGCCGTACCAAGAAAAGGAAAATGAAGCTTTCAGTGAAGAAGGTGCAGTTCTCGAAGATGANGAAGAA
GCGTGTGAAAGAACGGTCGCTTAAGTCCCTGCTCTAAGAGTTCTAATTCGATCGGTTGTCTGTGGGACAGTTTCAGTTTA
GCCGTGTTGTCGCTTAATGGCATATC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.18336.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis