Browse Element(s) Details


Os.18441.1.S1_at

Description gb:AK071215.1
DB_XREF= gi:32981238
TID=Os.18441.1
CNT=5
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.18441 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023084I15, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023084I15, full insert sequence.
FL= gb:AK071215.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g3881011/1126S proteasome non-ATPase regulatory subunit 6, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g38780OsAffx.24637.5.S1_x_at5/112+23426755..23436505Protein phosphatase 2C containing protein, expressed
LOC_Os02g38780Os.18261.1.S1_at4/112+23426755..23436505Protein phosphatase 2C containing protein, expressed
LOC_Os02g38780Os.5051.1.S1_x_at2/112+23426755..23436505Protein phosphatase 2C containing protein, expressed
LOC_Os02g38780Os.13531.1.S1_x_at1/112+23426755..23436505Protein phosphatase 2C containing protein, expressed
LOC_Os02g38790OsAffx.31174.5.S1_x_at7/112+23438197..23442968expressed protein
LOC_Os02g38790OsAffx.31174.4.S1_x_at4/112+23438197..23442968expressed protein
LOC_Os02g38790Os.29932.2.S1_x_at1/112+23438197..23442968expressed protein
LOC_Os02g38800Os.13531.1.S1_x_at11/112+23445846..2344882726S proteasome non-ATPase regulatory subunit 6, putative, expressed
LOC_Os02g38810Os.18441.1.S1_at11/112+23455595..2345997726S proteasome non-ATPase regulatory subunit 6, putative, expressed
LOC_Os02g38820Os.14404.1.S1_at11/112+23460100..23462169expressed protein
LOC_Os02g38830Os.40855.2.S1_x_at7/112+23468256..23469458hypothetical protein
LOC_Os02g38830Os.40855.4.S1_x_at4/112+23468256..23469458hypothetical protein
LOC_Os02g38830Os.40855.4.S1_at1/112+23468256..23469458hypothetical protein
LOC_Os02g38830Os.40360.1.S1_x_at1/112+23468256..23469458hypothetical protein
LOC_Os02g38840Os.26858.1.S1_at7/112+23474452..23480943Glucose-6-phosphate 1-dehydrogenase, cytoplasmic isoform, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0000338biological_processprotein deneddylation
GO:0006461biological_processprotein complex assembly
GO:0006511biological_processubiquitin-dependent protein catabolism
GO:0009640biological_processphotomorphogenesis
GO:0009793biological_processembryonic development (sensu Magnoliophyta)
GO:0030163biological_processprotein catabolism
GO:0005634cellular_componentnucleus
GO:0008180cellular_componentsignalosome complex
GO:0008541cellular_componentproteasome regulatory particle, lid subcomplex (sensu Eukaryota)
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.18441.1.S1_at--66--9791Chr02:23459275..23459299 (25 bp)
TAAGTTGGATCGCTATCTTCAGCCT
LOC_Os02g38810
Os.18441.1.S1_at--1113--2851Chr02:23459322..23459346 (25 bp)
AAGTGCGGACCGTTGTCTATTCACA
LOC_Os02g38810
Os.18441.1.S1_at--538--6231Chr02:23459383..23459407 (25 bp)
GATGGCCGCAGCATTTGGTGTGACT
LOC_Os02g38810
Os.18441.1.S1_at--843--1611Chr02:23459560..23459584 (25 bp)
AGCTGGGAAGCTTCACTGCAAGATC
LOC_Os02g38810
Os.18441.1.S1_at--799--351Chr02:23459586..23459610 (25 bp)
ATAAGGTTGCTGGTGTTCTGGAGAC
LOC_Os02g38810
Os.18441.1.S1_at--375--8051Chr02:23459605..23459629 (25 bp)
GGAGACAAACCGACCTGACGCTAGG
LOC_Os02g38810
Os.18441.1.S1_at--113--4851Chr02:23459624..23459648 (25 bp)
GCTAGGAATGCCTTCTACCAAGCGA
LOC_Os02g38810
Os.18441.1.S1_at--371--8031Chr02:23459738..23459762 (25 bp)
GGAGGTGTGATCCTTCTAGATCCCT
LOC_Os02g38810
Os.18441.1.S1_at--574--2691Chr02:23459766..23459790 (25 bp)
AAGCTCCCCATGGACATAAACCGTA
LOC_Os02g38810
Os.18441.1.S1_at--730--71Chr02:23459796..23459820 (25 bp)
ATTGCTGTTCTACTTGTACTCCTAG
LOC_Os02g38810
Os.18441.1.S1_at--181--9511Chr02:23459843..23459867 (25 bp)
TCTCGGTTTGATTTTATTGCGGACA
LOC_Os02g38810
Target Sequence 
TAAGTTGGATCGCTATCTTCAGCCTNATTTCCGCTACTATATGAGGGAAGTGCGGACCGTTGTCTATTCACAGTTTTTGG
AGTCATACAAGAGTGTGACAATGGAAGCGATGGCCGCAGCATTTGGTGTGACTGTTGATTTCATAGACCAGGAATTGTCG
CGGTTCNATTGCNAGCTGGGAAGCTTCACTGCAAGATCGATAAGGTTGCTGGTGTTCTGGAGACAAACCGACCTGACGCT
AGGAATGCCTTCTACCAAGCGACCATCAAGCAAGGGGACTTCTTGCTGAACCGCATCCAGAAACTGTCACGAGTCATTGA
CTTGTAAATTCAATGGTCTACGTTGGACGTTGGAGGTGTGATCCTTCTAGATCCCTGCAAAGCTCCCCATGGACATAAAC
CGTACTGAAATTGCTGTTCTACTTGTACTCCTAGGCTCATGAGAACATGATCTTTATCTCGGTTTGATTTTATTGCGGAC
A

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.18441.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis