Browse Element(s) Details


Os.18484.1.S1_at

Description gb:AK121821.1
DB_XREF= gi:37991444
TID=Os.18484.1
CNT=8
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.18484 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) Unknown protein (OSJNBa0009C08.2), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033099C23, full insert sequence.
FL= gb:AK061759.1 gb:AK121821.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g014205/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g01360Os.9117.1.S1_at11/113+245979..255782expressed protein
LOC_Os03g01360OsAffx.24932.2.S1_x_at11/113+245979..255782expressed protein
LOC_Os03g01360Os.55376.1.S1_at11/113+245979..255782expressed protein
LOC_Os03g01380NANA3+259910..262240retrotransposon protein, putative, unclassified
LOC_Os03g01390OsAffx.828.1.S1_x_at1/113+263280..265145transposon protein, putative, unclassified
LOC_Os03g01400NANA3+267139..268305retrotransposon protein, putative, unclassified
LOC_Os03g01410NANA3+272015..273263Leucine Rich Repeat family protein
LOC_Os03g01420Os.18484.1.S1_at5/113+274095..276245expressed protein
LOC_Os03g01430OsAffx.24934.1.S1_at11/113+280283..281740hypothetical protein
LOC_Os03g01450OsAffx.24935.1.S1_at7/113+287418..288747hypothetical protein
LOC_Os03g01460OsAffx.22275.1.S1_at11/113+290232..291020hypothetical protein
LOC_Os03g01470Os.43909.1.S1_at11/113+292151..293666expressed protein
LOC_Os03g01480OsAffx.24934.1.S1_at11/113+294441..295900hypothetical protein
LOC_Os03g01490Os.34626.1.S1_a_at10/113+300759..301988expressed protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.18484.1.S1_at--873--3071Chr03:274290..274314 (25 bp)
AATACCAAACTTAAGCTTCGAATGA
LOC_Os03g01420
Os.18484.1.S1_at--148--2851Chr03:274257..274281 (25 bp)
AAGTCGCTATGCCACGTGTCTAATG
LOC_Os03g01420
Os.18484.1.S1_at--31--8731Chr03:274241..274265 (25 bp)
TGTCTAATGGCACCGTCATCGCTGA
LOC_Os03g01420
Os.18484.1.S1_at--327--4231Chr03:274229..274253 (25 bp)
CCGTCATCGCTGATATCTTCTGAAT
LOC_Os03g01420
Os.18484.1.S1_at--488--4191Chr03:274192..274216 (25 bp)
CCCTGTTCTACCCATCATAATGTAT
LOC_Os03g01420
Os.18484.1.S1_at--313--1191Chr03:274086..274110 (25 bp)
AGTATTACGTATTGTCTCCTGCAAC
NONE
Os.18484.1.S1_at--346--7633Chr10:11750493..11750643 (24 bp)
GGGACTGCAAAACCTGTTTGGTCAA
NONE
Os.18484.1.S1_at--1137--572Chr03:6212240..6212264 (25 bp)
ATCCAGTATGGATTGTTGTTGCAAG
NONE
Os.18484.1.S1_at--176--3471Chr03:273973..273997 (25 bp)
CAGGGTTGCAAGGTCCTCGATCGAA
NONE
Os.18484.1.S1_at--242--5891Chr03:273876..273900 (25 bp)
GAGCGTGAAATGCAATCCTGAAACT
NONE
Os.18484.1.S1_at--228--8811Chr03:273825..273849 (25 bp)
TGTTGCCGCTGTGCAGTGTATTACT
NONE
Target Sequence 
AATACCAAACTTAAGCTTCGAATGAAAAAGAACAAGTCGCTATGCCACGTGTCTAATGGCACCGTCATCGCTGATATCTT
CTGAATAATCTTTCAACACCCTGTTCTACCCATCATAATGTATGATCTGAATAACTTTTGGAGTTGACACTATATATTAT
CTGTTAGTTATTGTTATTATTGGTTAGTTCAAATGGAAGGAGGGAGTATTACGTATTGTCTCCTGCAACGGGACTGCAAA
ACCTGTTTGGTCAAATACAATTTTGAATCCAGTATGGATTGTTGTTGCAAGGGAGAGCACAAAGTGAAGCTGAGAATCAG
GGTTGCAAGGTCCTCGATCGAAGCAGAATTTCAGAATATAACCAGACAAGACAGGATATTGATCTAAATTAAGAACTGAT
GTTGGCAATGGAATGAGCGTGAAATGCAATCCTGAAACTGAAATNTTGTCGCCAGCTGCTCCTGCTGTTGCCGCTGTGCA
GTGTATTACT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.18484.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis