Browse Element(s) Details


Os.18494.1.S1_at

Description gb:CB680041
DB_XREF= gi:29683766
DB_XREF=OSJNEf04E20.f
CLONE=OSJNEf04E20
TID=Os.18494.1
CNT=4
FEA=mRNA
TIER=ConsEnd
STK=1
UG=Os.18494 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) contains ESTs AU172959(E50464),AU030005(E50464)~patatin-like protein (OJ1343_B12.21), mRNA
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g0511010/11Patatin-like phospholipase family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g05060Os.35959.1.S1_at10/117+2230274..2232730expressed protein
LOC_Os07g05070OsAffx.28278.1.S1_at10/117+2233716..2234318hypothetical protein
LOC_Os07g05084OsAffx.1499.1.S1_at11/117+2241974..2243857expressed protein
LOC_Os07g05100OsAffx.16092.1.S1_at11/117+2251212..2252853hypothetical protein
LOC_Os07g05110Os.18494.1.S1_at10/117+2255620..2257435Patatin-like phospholipase family protein, expressed
LOC_Os07g05120OsAffx.28280.1.S1_at11/117+2257844..2259856hypothetical protein
LOC_Os07g05140OsAffx.29313.1.S1_at1/117+2267989..2272456transposon protein, putative, Mutator sub-class
LOC_Os07g05140Os.56216.1.S1_at1/117+2267989..2272456transposon protein, putative, Mutator sub-class

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Gene Ontology Classification
GO idTypeName
GO:0045735molecular_functionnutrient reservoir activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.18494.1.S1_at--468--4571NONE
GCGCGTCGGACATGGTAGATCAAGC
NONE
Os.18494.1.S1_at--438--10051Chr07:2256837..2256861 (25 bp)
TAGATCAAGCTGTCGCCATGGCGTT
LOC_Os07g05110
Os.18494.1.S1_at--404--871Chr07:2256854..2256878 (25 bp)
ATGGCGTTCGGACAACACAGGACAA
LOC_Os07g05110
Os.18494.1.S1_at--794--5611Chr07:2256874..2256898 (25 bp)
GACAAGCAATTACGTCCGCATCCAG
LOC_Os07g05110
Os.18494.1.S1_at--471--1631Chr07:2257156..2257180 (25 bp)
AGCGGTTCGCGCGTGAGCTGATCAA
LOC_Os07g05110
Os.18494.1.S1_at--681--8831Chr07:2257174..2257198 (25 bp)
TGATCAAGGAACACGGCCGGAGGAA
LOC_Os07g05110
Os.18494.1.S1_at--90--4251Chr07:2257190..2257214 (25 bp)
CCGGAGGAAGCAGCATGTTCCGCCG
LOC_Os07g05110
Os.18494.1.S1_at--901--5731Chr07:2257240..2257264 (25 bp)
GACTGGACTGCCATGTGAGCAAGAA
LOC_Os07g05110
Os.18494.1.S1_at--50--4651Chr07:2257323..2257347 (25 bp)
GCGTATTGCGGTGTTGTTCGTGCAC
LOC_Os07g05110
Os.18494.1.S1_at--215--3931Chr07:2257351..2257375 (25 bp)
CGGCGATGGACGTCGATCATACTAT
LOC_Os07g05110
Os.18494.1.S1_at--173--431Chr07:2257374..2257398 (25 bp)
ATCATACAATCGTACTGCATCATGT
LOC_Os07g05110
Target Sequence 
GCGCGTCGGACATGGTAGATCAAGCTGTCGCCATGGCGTTCGGACAACACAGGACAAGCAATTACGTCCGCATCCAGGGT
ATGGGGGTGGCNGCGGNNGGCGCNGGCGGCGGCGTGGCNGTGCNGGCNGGCGAGACGGCNGGAGAAGGCNGGTGTGGGTG
GCNGGAGGCGATGCTGCAGCAGAGGAACGTGGAGGCGGTGATGTTCCAGGGGAGGAGGCTCGCCGGCGAGACCAACGCCG
AGAAGGTGGAGCGGTTCGCGCGTGAGCTGATCAAGGAACACGGCCGGAGGAAGCAGCATGTTCCGCCGGCGGCGAGCGGC
GGCGGCGGCGGCGGACTGGACTGCCATGTGAGCAAGAAACAGCCNGTAAGTCAGCCACGGCGAGCGGTGTCGCGGTGGCT
GACCGGCCGACCGCCGGGCGTATTGCGGTGTTGTTCGTGCACCTCCGGCGATGGACGTCGATCATACTATCATACAATCG
TACTGCATCATGT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.18494.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis