Browse Element(s) Details


Os.1851.1.S1_at

Description gb:AB049822.1
DB_XREF= gi:12082313
GEN=ALS
TID=Os.1851.1
CNT=22
FEA=FLmRNA
TIER=FL+Stack
STK=7
UG=Os.1851 (NCBI UniGene Cluster)
DEF=Oryza sativa ALS mRNA for acetolactate synthase, complete cds, herbicide sensitive wild type.
PROD=acetolactate synthase
FL= gb:AB049822.1 gb:AB049823.1 gb:AK058963.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g3063011/11Acetolactate synthase III, chloroplast precursor, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g30600Os.5776.1.S1_at11/112+18205622..18206122expressed protein
LOC_Os02g30600Os.13482.1.S1_x_at4/112+18205622..18206122expressed protein
LOC_Os02g30610Os.57172.1.S1_at11/112+18213398..18214905expressed protein
LOC_Os02g30620Os.14990.1.S1_a_at11/112+18221542..18225610DnaJ domain containing protein, expressed
LOC_Os02g30620Os.14990.1.S1_at11/112+18221542..18225610DnaJ domain containing protein, expressed
LOC_Os02g30620Os.14990.2.S1_at11/112+18221542..18225610DnaJ domain containing protein, expressed
LOC_Os02g30624Os.12107.1.S1_a_at10/112+18225620..18229911U6 snRNA-associated Sm-like protein LSm6, putative, expressed
LOC_Os02g30630Os.1851.1.S1_at11/112+18230204..18232481Acetolactate synthase III, chloroplast precursor, putative, expressed
LOC_Os02g30640Os.25021.1.A1_at11/112+18233350..18235970expressed protein
LOC_Os02g30650Os.8967.1.S1_a_at11/112+18246701..18250149heavy metal-associated domain containing protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0001666biological_processresponse to hypoxia
GO:0009082biological_processbranched chain family amino acid biosynthesis
GO:0003984molecular_functionacetolactate synthase activity
GO:0004737molecular_functionpyruvate decarboxylase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.1851.1.S1_at--755--3111Chr02:18231997..18232021 (25 bp)
AATATTCCTGCAGTCCGTGTAACAA
LOC_Os02g30630
Os.1851.1.S1_at--898--1451Chr02:18232022..18232046 (25 bp)
AGAAGAGTGAAGTCCGTGCCGCCAT
LOC_Os02g30630
Os.1851.1.S1_at--716--3231Chr02:18232047..18232071 (25 bp)
CAAGAAGATGCTCGAGACTCCAGGG
LOC_Os02g30630
Os.1851.1.S1_at--96--5731Chr02:18232062..18232086 (25 bp)
GACTCCAGGGCCATACTTGTTGGAT
LOC_Os02g30630
Os.1851.1.S1_at--969--771Chr02:18232109..18232133 (25 bp)
ATGTGCTGCCTATGATCCCAAGTGG
LOC_Os02g30630
Os.1851.1.S1_at--804--6911Chr02:18232196..18232220 (25 bp)
GTATGTTGGCAAAGCACCAGCCCGG
LOC_Os02g30630
Os.1851.1.S1_at--137--1671Chr02:18232214..18232238 (25 bp)
AGCCCGGCCTATGTTTGACCTGAAT
LOC_Os02g30630
Os.1851.1.S1_at--999--1731Chr02:18232308..18232332 (25 bp)
ACCATATGCTCTTCTGTTTTACTTG
LOC_Os02g30630
Os.1851.1.S1_at--640--7831Chr02:18232350..18232374 (25 bp)
GGTAATCCTAATTAGCTTCCTGCTG
LOC_Os02g30630
Os.1851.1.S1_at--442--10011Chr02:18232362..18232386 (25 bp)
TAGCTTCCTGCTGTCTAGGTTTGTA
LOC_Os02g30630
Os.1851.1.S1_at--144--7071Chr02:18232428..18232452 (25 bp)
GTAAGTTTCTTGTCCTACATATCAA
LOC_Os02g30630
Target Sequence 
AATATTCCTGCAGTCCGTGTAACAAAGAAGAGTGAAGTCCGTGCCGCCATCAAGAAGATGCTCGAGACTCCAGGGCCATA
CTTGTTGGATATCATCGTCCCNGCACCAGGAGCATGTGCTGCCTATGATCCCAAGTGGGGGCGCATTCAAGGACATGATC
CTGGATGGTGATGGCAGGACTGTGTATTAATCTATAATCTGTATGTTGGCAAAGCACCAGCCCGGCCTATGTTTGACCTG
AATGACCCATAAAGAGTGGTATGCCTATGATGTTTGTATGTGCTCTATCAATAACTAAGGTGTCAACTATGAACCATATG
CTCTTCTGTTTTACTTGTTTGATGTGCTTGGCATGGTAATCCTAATTAGCTTCCTGCTGTCTAGGTTTGTAGTGTGTTGT
TTTCNGTAGGCATATGCATCACAAGATATCATGTAAGTTTCTTGTCCTACATATCAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.1851.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis