Browse Element(s) Details


Os.18549.1.S1_at

Description gb:AB101646.1
DB_XREF= gi:31339098
GEN=Roc3
TID=Os.18549.1
CNT=6
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.18549 (NCBI UniGene Cluster)
DEF=Oryza sativa (japonica cultivar-group) Roc3 mRNA for GL2-type homeodomain protein, complete cds.
PROD=GL2-type homeodomain protein
FL= gb:AK071939.1 gb:AB101646.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g4249011/11OCL4 protein, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g42448NANA10+22556602..22557262retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os10g42460NANA10+22561550..22563687retrotransposon protein, putative, Ty3-gypsy subclass, expressed
LOC_Os10g42464OsAffx.10020.1.S1_x_at1/1110+22565818..22566645retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os10g42464OsAffx.8338.1.S1_x_at1/1110+22565818..22566645retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os10g42470NANA10+22566992..22570348retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os10g42480Os.50255.1.S1_at3/1110+22570908..22574231retrotransposon protein, putative, unclassified
LOC_Os10g42480Os.9332.2.S1_x_at1/1110+22570908..22574231retrotransposon protein, putative, unclassified
LOC_Os10g42480Os.9332.2.S1_at1/1110+22570908..22574231retrotransposon protein, putative, unclassified
LOC_Os10g42490Os.18549.1.S1_at11/1110+22580779..22586512OCL4 protein, putative, expressed
LOC_Os10g42490Os.57416.1.S1_x_at2/1110+22580779..22586512OCL4 protein, putative, expressed
LOC_Os10g42490Os.57414.1.S1_x_at1/1110+22580779..22586512OCL4 protein, putative, expressed
LOC_Os10g42500Os.14875.1.S1_at11/1110+22590828..22593204plastid-lipid associated protein 3, chloroplast precursor, putative, expressed
LOC_Os10g42510Os.46614.2.S1_x_at11/1110+22594459..22602989expressed protein
LOC_Os10g42520Os.46999.1.S1_at11/1110+22605218..22606346expressed protein
LOC_Os10g42540Os.5914.1.S1_at10/1110+22609266..22611217NADH-ubiquinone oxidoreductase, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006355biological_processregulation of transcription, DNA-dependent
GO:0009913biological_processepidermal cell differentiation
GO:0005634cellular_componentnucleus
GO:0003677molecular_functionDNA binding
GO:0003700molecular_functiontranscription factor activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.18549.1.S1_at--832--5551Chr10:22581781..22581805 (25 bp)
GAAACCAGTAGCACTCCTCCAAGAA
LOC_Os10g42490
Os.18549.1.S1_at--480--1751Chr10:22581648..22581672 (25 bp)
ACCTCTCGAGTGTCACTGCGATCAA
LOC_Os10g42490
Os.18549.1.S1_at--371--3831Chr10:22581633..22581657 (25 bp)
CTGCGATCAACAGCCATGTCTGCAA
LOC_Os10g42490
Os.18549.1.S1_at--447--6451Chr10:22581596..22581620 (25 bp)
GATCACAGCTGCACTCAAAAGTTCA
LOC_Os10g42490
Os.18549.1.S1_at--1089--1671Chr10:22581552..22581576 (25 bp)
AGCCGGCGTCCGATCAGTAGCAAAG
LOC_Os10g42490
Os.18549.1.S1_at--199--3031Chr10:22581480..22581504 (25 bp)
AATGCCTCCCAATTTATTTCGCTAA
LOC_Os10g42490
Os.18549.1.S1_at--293--191Chr10:22581465..22581489 (25 bp)
ATTTCGCTAACATCGCAGTTTGTTT
LOC_Os10g42490
Os.18549.1.S1_at--1132--1171Chr10:22581449..22581473 (25 bp)
AGTTTGTTTTTCTGTTAGCTCTCGG
LOC_Os10g42490
Os.18549.1.S1_at--244--10451Chr10:22581435..22581459 (25 bp)
TTAGCTCTCGGTCTGGCTGGTTCAT
LOC_Os10g42490
Os.18549.1.S1_at--935--2171Chr10:22581379..22581403 (25 bp)
ACACTAACAGCTACTCAAATCTCTC
LOC_Os10g42490
Os.18549.1.S1_at--301--10211Chr10:22581340..22581364 (25 bp)
TATTTCTGCCTCTCAAAATGACGAA
LOC_Os10g42490
Target Sequence 
GAAACCAGTAGCACTCCTCCAAGAAACAGCAGCAGCAACAACAACAATGCAGATGAGCTGCTGCCTCCCAATGGCTGCCT
CCTCACCGTCGGCATGCAGGTGCTGGCCAGCGCCGTACCTTCTGCCAAGCTCAACCTCTCGAGTGTCACTGCGATCAACA
GCCATGTCTGCAACGCCATTCACCAGATCACAGCTGCACTCAAAAGTTCAGCAGGTGGTGCTGGGGGTGAGCCGGCGTCC
GATCAGTAGCAAAGGAGACCTGGAGGAGAGGGGATCGGAGCAACATGGGATCAGACACCAAAATGCCTCCCAATTTATTT
CGCTAACATCGCAGTTTGTTTTTCTGTTAGCTCTCGGTCTGGCTGGTTCATCAGGTGCAAGGGAGGGTTTGACAAGAAGC
CAACACTAACAGCTACTCAAATCTCTCCTCTCTTCCCGCCATATTTCTGCCTCTCAAAATGACGAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.18549.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis