Browse Element(s) Details


Os.46614.2.S1_x_at

Description gb:NM_197875.1
DB_XREF= gi:37537109
TID=Os.46614.2
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
UG=Os.46614 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) hypothetical protein (OSJNBa0027L23.16), mRNA
DEF=Oryza sativa (japonica cultivar-group) hypothetical protein (OSJNBa0027L23.16), mRNA.
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g4251011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g42470NANA10+22566992..22570348retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os10g42480Os.50255.1.S1_at3/1110+22570908..22574231retrotransposon protein, putative, unclassified
LOC_Os10g42480Os.9332.2.S1_x_at1/1110+22570908..22574231retrotransposon protein, putative, unclassified
LOC_Os10g42480Os.9332.2.S1_at1/1110+22570908..22574231retrotransposon protein, putative, unclassified
LOC_Os10g42490Os.18549.1.S1_at11/1110+22580779..22586512OCL4 protein, putative, expressed
LOC_Os10g42490Os.57416.1.S1_x_at2/1110+22580779..22586512OCL4 protein, putative, expressed
LOC_Os10g42490Os.57414.1.S1_x_at1/1110+22580779..22586512OCL4 protein, putative, expressed
LOC_Os10g42500Os.14875.1.S1_at11/1110+22590828..22593204plastid-lipid associated protein 3, chloroplast precursor, putative, expressed
LOC_Os10g42510Os.46614.2.S1_x_at11/1110+22594459..22602989expressed protein
LOC_Os10g42520Os.46999.1.S1_at11/1110+22605218..22606346expressed protein
LOC_Os10g42540Os.5914.1.S1_at10/1110+22609266..22611217NADH-ubiquinone oxidoreductase, putative, expressed
LOC_Os10g42550Os.9645.1.S1_at10/1110+22613973..22615398inositol phosphate kinase, putative, expressed
LOC_Os10g42550Os.53176.1.S1_at1/1110+22613973..22615398inositol phosphate kinase, putative, expressed
LOC_Os10g42560OsAffx.7895.1.S1_at11/1110+22617981..22618376hypothetical protein
LOC_Os10g42570OsAffx.6.1.S1_at11/1110+22619210..22620469retrotransposon protein, putative, Ty1-copia subclass
LOC_Os10g42580OsAffx.5.1.S1_at11/1110+22620771..22622736retrotransposon protein, putative, Ty1-copia subclass
LOC_Os10g42590OsAffx.4.1.S1_at11/1110+22623029..22624138retrotransposon protein, putative, Ty1-copia subclass
LOC_Os10g42600Os.35344.18.S1_x_at11/1110+22627429..22634184transposon protein, putative, Mutator sub-class
LOC_Os10g42600Os.35344.3.S1_x_at9/1110+22627429..22634184transposon protein, putative, Mutator sub-class
LOC_Os10g42600OsAffx.22940.5.S1_x_at4/1110+22627429..22634184transposon protein, putative, Mutator sub-class
LOC_Os10g42600OsAffx.22940.5.S1_at3/1110+22627429..22634184transposon protein, putative, Mutator sub-class

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.46614.2.S1_x_at--43--8031Chr10:22594973..22594997 (25 bp)
GGAGGTTGCTAACCTTATCTCCCTT
LOC_Os10g42510
Os.46614.2.S1_x_at--805--10091Chr10:22594897..22594921 (25 bp)
TAGGAATACCTCACTTACATCCGAG
LOC_Os10g42510
Os.46614.2.S1_x_at--52--10491Chr10:22594883..22594907 (25 bp)
TTACATCCGAGGAGCCTATGGCTGA
LOC_Os10g42510
Os.46614.2.S1_x_at--562--1131Chr10:22594831..22594855 (25 bp)
AGTGCTGGACATGCTCGCTGAAATA
LOC_Os10g42510
Os.46614.2.S1_x_at--318--2371Chr10:22594797..22594821 (25 bp)
AAACGAAGTGCTATTGCTCTGGGAA
LOC_Os10g42510
Os.46614.2.S1_x_at--298--3691Chr10:22594732..22594756 (25 bp)
CTATAGTGGTTTGATCGGCCTGCGA
LOC_Os10g42510
Os.46614.2.S1_x_at--493--491Chr10:22594719..22594743 (25 bp)
ATCGGCCTGCGAGAAGCTGCTATAA
LOC_Os10g42510
Os.46614.2.S1_x_at--488--10231Chr10:22594672..22594696 (25 bp)
TATTGATTCTGACCTTGTCTGGCTT
LOC_Os10g42510
Os.46614.2.S1_x_at--182--451Chr10:22594586..22594610 (25 bp)
ATCTAGTGGAGCTGTCTGACCTTTT
LOC_Os10g42510
Os.46614.2.S1_x_at--1158--6011Chr10:22594541..22594565 (25 bp)
GAGAGTATCTCTTTGTGCTGTATGG
LOC_Os10g42510
Os.46614.2.S1_x_at--609--6371Chr10:22594491..22594515 (25 bp)
GATCCTTCATCTGTACGTGAGGTTT
LOC_Os10g42510
Target Sequence 
GGAGGTTGCTAACCTTATCTCCCTTCCAACGAAAAAGAATGGCACTGATGGATGAGAAAGCTATTATTTTACCATATAGG
AATACCTCACTTACATCCGAGGAGCCTATGGCTGAGATATCCAGCCAAAAGATTCAGATTGCAGTGCTGGACATGCTCGC
TGAAATATCTTCCAACAAACGAAGTGCTATTGCTCTGGGAAGTGTACTAAAGAAGGTTTGTGGACTTGTGGTGGGAATTG
CCTATAGTGGTTTGATCGGCCTGCGAGAAGCTGCTATAAGGGCATTGACGGGAATTGCTTCTATTGATTCTGACCTTGTC
TGGCTTCTTATGGCCGATGTGTATTATTCATTGAACCAAAGGGATATTCCTTTACCACCTAAACAAGATCTAGTGGAGCT
GTCTGACCTTTTGCCCCCTCCAATGTCATCAAGAGAGTATCTCTTTGTGCTGTATGGAGGTGAGGGTGTTAGATGTGATA
TAGATCCTTCATCTGTACGTGAGGTTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.46614.2.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis