Browse Element(s) Details


Os.9645.1.S1_at

Description gb:AK059148.1
DB_XREF= gi:32969166
TID=Os.9645.1
CNT=4
FEA=FLmRNA
TIER=FL
STK=0
UG=Os.9645 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) putative inositol 1,3,4-trisphosphate 56-kinase (OSJNBa0027L23.5), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-023-B06, full insert sequence.
FL= gb:AK059148.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g4255010/11inositol phosphate kinase, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g42500Os.14875.1.S1_at11/1110+22590828..22593204plastid-lipid associated protein 3, chloroplast precursor, putative, expressed
LOC_Os10g42510Os.46614.2.S1_x_at11/1110+22594459..22602989expressed protein
LOC_Os10g42520Os.46999.1.S1_at11/1110+22605218..22606346expressed protein
LOC_Os10g42540Os.5914.1.S1_at10/1110+22609266..22611217NADH-ubiquinone oxidoreductase, putative, expressed
LOC_Os10g42550Os.9645.1.S1_at10/1110+22613973..22615398inositol phosphate kinase, putative, expressed
LOC_Os10g42550Os.53176.1.S1_at1/1110+22613973..22615398inositol phosphate kinase, putative, expressed
LOC_Os10g42560OsAffx.7895.1.S1_at11/1110+22617981..22618376hypothetical protein
LOC_Os10g42570OsAffx.6.1.S1_at11/1110+22619210..22620469retrotransposon protein, putative, Ty1-copia subclass
LOC_Os10g42580OsAffx.5.1.S1_at11/1110+22620771..22622736retrotransposon protein, putative, Ty1-copia subclass
LOC_Os10g42590OsAffx.4.1.S1_at11/1110+22623029..22624138retrotransposon protein, putative, Ty1-copia subclass
LOC_Os10g42600Os.35344.18.S1_x_at11/1110+22627429..22634184transposon protein, putative, Mutator sub-class
LOC_Os10g42600Os.35344.3.S1_x_at9/1110+22627429..22634184transposon protein, putative, Mutator sub-class
LOC_Os10g42600OsAffx.22940.5.S1_x_at4/1110+22627429..22634184transposon protein, putative, Mutator sub-class
LOC_Os10g42600OsAffx.22940.5.S1_at3/1110+22627429..22634184transposon protein, putative, Mutator sub-class
LOC_Os10g42610Os.5318.1.S1_a_at11/1110+22634395..22635931expressed protein

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Gene Ontology Classification
GO idTypeName
GO:0046853biological_processinositol and derivative phosphorylation
GO:0005634cellular_componentnucleus
GO:0005737cellular_componentcytoplasm
GO:0003824molecular_functioncatalytic activity
GO:0004428molecular_functioninositol or phosphatidylinositol kinase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.9645.1.S1_at--789--7651Chr10:22614497..22614521 (25 bp)
GGGATCGCTACCTCGTCATTGACAT
LOC_Os10g42550
Os.9645.1.S1_at--941--1291Chr10:22614449..22614473 (25 bp)
AGATGCCCGGATACGAGACTGTGCT
LOC_Os10g42550
Os.9645.1.S1_at--115--9091Chr10:22614428..22614452 (25 bp)
TGCTCACCGATTTCTTCTGGGAGAT
LOC_Os10g42550
Os.9645.1.S1_at--1028--8911Chr10:22614342..22614366 (25 bp)
TGAGCCACATCAATTTCGACTGCCA
LOC_Os10g42550
Os.9645.1.S1_at--479--631Chr10:22614318..22614342 (25 bp)
ATGCTCGCAAACGTGCAATGCCTGG
LOC_Os10g42550
Os.9645.1.S1_at--987--6251Chr10:22614294..22614318 (25 bp)
GATGTCAGCGCGAGGTACCAGGTAT
LOC_Os10g42550
Os.9645.1.S1_at--606--9131Chr10:22614151..22614175 (25 bp)
TGCGGTGTAAATCCTTTCTCCTAAC
LOC_Os10g42550
Os.9645.1.S1_at--601--9251Chr10:22614133..22614157 (25 bp)
TCCTAACTCCTTTCATACTGGTTGT
LOC_Os10g42550
Os.9645.1.S1_at--24--10431Chr10:22614107..22614131 (25 bp)
TTAGGTATCCTTCTGTTCTTCGTAA
LOC_Os10g42550
Os.9645.1.S1_at--469--6731Chr10:22614093..22614117 (25 bp)
GTTCTTCGTAATTTGCTTCATCTAG
LOC_Os10g42550
Os.9645.1.S1_at--1128--5211Chr10:22613970..22613994 (25 bp)
GAATTTTTGTTCTTGAGTCGCCAAA
NONE
Target Sequence 
GGGATCGCTACCTCGTCATTGACATCAACTACNTTCCCCGGCNTATGCCAAGATGCCCGGATACGAGACTGTGCTCACCG
ATTTCTTCTGGGAGATGGTTCACAAGGACGACGACACGCCCAACCTCAACCCCAACCCCAANGACGAGGATGTCAAATGA
GCCACATCAATTTCGACTGCCATGCTCGCAAACGTGCAATGCCTGGATGTCAGCGCGAGGTACCAGGTATGCTGGTTGCA
GAAAATCTGATGAGGGGAATANCGAGCAAGCAATTAGGATGGGGAGATCGGGATTAACGGATTCCTGACCATGTCGGGGT
TTCACCGGTGCCATGCACAGACCCTACCTGCGGTGTAAATCCTTTCTCCTAACTCCTTTCATACTGGTTGTTTTAGGTAT
CCTTCTGTTCTTCGTAATTTGCTTCATCTAGTTTAGTTAGAGCAGCCAAGAGAGAGAAAAGAAATGAAGAACGAAGTTCT
CAAAGAAAATTTGCTCGGTGCACAAAACTTTTGTTCCTGAGTACTGGATGAATTTTTGTTCTTGAGTCGCCAAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.9645.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis