Browse Element(s) Details


Os.18594.1.S2_at

Description gb:AK072329.1
DB_XREF= gi:32982352
TID=Os.18594.1
CNT=13
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.18594 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023039E06, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023039E06, full insert sequence.
FL= gb:AK072329.1 gb:AK121578.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os11g0994011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os11g09910NANA11+5296188..5297351hypothetical protein
LOC_Os11g09919OsAffx.19542.3.S1_x_at7/1111+5300645..5311918retrotransposon protein, putative, Ty1-copia subclass
LOC_Os11g09919Os.31535.1.A1_at1/1111+5300645..5311918retrotransposon protein, putative, Ty1-copia subclass
LOC_Os11g09919OsAffx.28530.1.S1_at1/1111+5300645..5311918retrotransposon protein, putative, Ty1-copia subclass
LOC_Os11g09928NANA11+5312395..5312639NA
LOC_Os11g09940Os.18594.1.S1_at11/1111+5320235..5323128expressed protein
LOC_Os11g09940Os.18594.1.S2_at11/1111+5320235..5323128expressed protein
LOC_Os11g09950NANA11+5327559..5328579Transposable element protein, putative, Retrotrans_gag
LOC_Os11g09960OsAffx.30905.4.S1_at10/1111+5332325..5335972hypothetical protein
LOC_Os11g09960OsAffx.30905.2.S1_at3/1111+5332325..5335972hypothetical protein
LOC_Os11g09960Os.17219.2.S1_x_at2/1111+5332325..5335972hypothetical protein
LOC_Os11g09970OsAffx.30905.1.S1_at11/1111+5337930..5341081F-box domain containing protein, expressed
LOC_Os11g09970Os.17219.2.S1_x_at1/1111+5337930..5341081F-box domain containing protein, expressed
LOC_Os11g09970Os.24499.1.S1_at1/1111+5337930..5341081F-box domain containing protein, expressed
LOC_Os11g09970OsAffx.30905.2.S1_at1/1111+5337930..5341081F-box domain containing protein, expressed
LOC_Os11g09980OsAffx.26161.1.S1_at10/1111+5345729..5347368hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.18594.1.S2_at--907--5111Chr11:5320742..5320891 (25 bp)
GCACATGTTTTGGTCTTTGCACCAC
LOC_Os11g09940
Os.18594.1.S2_at--918--7131Chr11:5320730..5320754 (25 bp)
GTCTTTGCACCACTTGTGAGGGCAA
LOC_Os11g09940
Os.18594.1.S2_at--739--5171Chr11:5320704..5320728 (25 bp)
GCAAGTACAATTTTGCACCCACCAT
LOC_Os11g09940
Os.18594.1.S2_at--583--3351Chr11:5320689..5320713 (25 bp)
CACCCACCATCTGGATATCTTTTTG
LOC_Os11g09940
Os.18594.1.S2_at--717--6711Chr11:5320604..5320628 (25 bp)
GTTCTGCTTCGTGCAGTCTTAGTAA
LOC_Os11g09940
Os.18594.1.S2_at--424--2951Chr11:5320568..5320592 (25 bp)
AAGGCCTGCTAGAGTCAGATTTCAT
LOC_Os11g09940
Os.18594.1.S2_at--773--811Chr11:5320471..5320495 (25 bp)
ATGGTGATGATATAGCTCTGCTGTT
LOC_Os11g09940
Os.18594.1.S2_at--1058--8471Chr11:5320410..5320434 (25 bp)
TGGAATTATTTATCCTCGAACCCCT
LOC_Os11g09940
Os.18594.1.S2_at--592--9212Chr01:4587211..4587251 (25 bp)
TCCAATCCCTCTGAACAAGGCTTAA
NONE
Os.18594.1.S2_at--829--7651Chr11:5320348..5320372 (25 bp)
GGGATCATTATTCAGGTTACAAGTT
LOC_Os11g09940
Os.18594.1.S2_at--322--8511Chr11:5320282..5320306 (25 bp)
TGGACAATGAGTCGCAACACTGTAT
LOC_Os11g09940
Target Sequence 
GCACATGTTTTGGTCTTTGCACCACTTGTGAGGGCAATGCAAGTACAATTTTGCACCCACCATCTGGATATCTTTTTGAG
GATGATGTTGATGACGCCATTGAAGTTTATGATGTTAATGCTGCTATTGATGTGTTTGGTTCTGCTTCGTGCAGTCTTAG
TAAAGATAAAGATAAAGGCCTGCTAGAGTCAGATTTCATATATTTTGATCATGGAAGGAATGCAAATCTTACAAAGATTC
TGAATGACGACTCTATTTTATGATGAAGACAATGGTGATGATATAGCTCTGCTGTTAGATTTGGAGGGGATTTATTGACA
TATATTGAGGTGTGGAATTATTTATCCTCGAACCCCTCCAATCCCTCTGAACAAGGCTTAATATGGATGAGGAGGGGATC
ATTATTCAGGTTACAAGTTTGTCTAGTCATTGTAATAACAGAAGAATCTATATTTGCTTTTGGACAATGAGTCGCAACAC
TGTAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.18594.1.S2_at     

Putative homologies in rice

Putative homologies in arabidopsis