Browse Element(s) Details


Os.18604.1.S1_at

Description gb:AK122059.1
DB_XREF= gi:37991705
TID=Os.18604.1
CNT=9
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.18604 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) unknown protein (OSJNBa0052F07.2), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033115B08, full insert sequence.
FL= gb:AK122059.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g5869011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g58640Os.12938.1.S1_at11/113+33333049..33341193FHA domain containing protein, expressed
LOC_Os03g58640Os.49478.1.S1_at1/113+33333049..33341193FHA domain containing protein, expressed
LOC_Os03g58650Os.10983.1.S1_at11/113+33341534..33344372expressed protein
LOC_Os03g58660OsAffx.13097.1.S1_s_at11/113+33348208..33355783transposon protein, putative, Mutator sub-class
LOC_Os03g58660Os.27264.1.A1_at1/113+33348208..33355783transposon protein, putative, Mutator sub-class
LOC_Os03g58670NANA3+33356693..33357151Protease inhibitor/seed storage/LTP family protein
LOC_Os03g58690Os.18604.1.S1_at11/113+33360594..33361872expressed protein
LOC_Os03g58700Os.11600.1.S1_at11/113+33363847..33372006vacuolar protein sorting-associated protein 35 family protein, putative, expressed
LOC_Os03g58710Os.14346.1.S1_at11/113+33372162..33375649riboflavin biosynthesis protein, putative, expressed
LOC_Os03g58720Os.18152.1.S1_at10/113+33376632..33390046RNA recognition motif family protein, expressed
LOC_Os03g58720OsAffx.5632.1.S1_at2/113+33376632..33390046RNA recognition motif family protein, expressed
LOC_Os03g58720OsAffx.5632.1.S1_x_at2/113+33376632..33390046RNA recognition motif family protein, expressed
LOC_Os03g58730Os.2987.3.S1_x_at1/113+33386816..33389951retrotransposon protein, putative, Ty1-copia subclass, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.18604.1.S1_at--660--10151Chr03:33360788..33360812 (25 bp)
TATCGTTTCTTCTCTTCCAGTGTTT
LOC_Os03g58690
Os.18604.1.S1_at--914--1091Chr03:33360806..33360829 (24 bp)
AGTGTTTCCGAGTCACGTGGCACGA
LOC_Os03g58690
Os.18604.1.S1_at--952--6091Chr03:33361136..33361160 (25 bp)
GAGTCCCTCGCCTAAGCAAGAATCT
LOC_Os03g58690
Os.18604.1.S1_at--891--5391Chr03:33361220..33361244 (25 bp)
GAAGCTTAAGCTACTCTCGTTGATA
LOC_Os03g58690
Os.18604.1.S1_at--256--8831Chr03:33361512..33361536 (25 bp)
TGATTTCCTCGATGGCCATGTTACT
LOC_Os03g58690
Os.18604.1.S1_at--540--211Chr03:33361655..33361679 (25 bp)
ATTTGAACACTCGTCCTGTGGTTAT
LOC_Os03g58690
Os.18604.1.S1_at--768--7491Chr03:33361672..33361696 (25 bp)
GTGGTTATTTATCTACTACTACGTA
LOC_Os03g58690
Os.18604.1.S1_at--547--7391Chr03:33361704..33361728 (25 bp)
GTGATGTCTCAACAGCGCGATTTCA
LOC_Os03g58690
Os.18604.1.S1_at--768--3151Chr03:33361735..33361759 (25 bp)
AATTCTCTCAACAACGCGATTTCAC
LOC_Os03g58690
Os.18604.1.S1_at--77--4991Chr03:33361760..33361784 (25 bp)
GCATGAATTCTCTTGGATGGTCCCT
LOC_Os03g58690
Os.18604.1.S1_at--199--8131Chr03:33361788..33361812 (25 bp)
GGACTACTCCAGATGGCGGTGTATT
LOC_Os03g58690
Target Sequence 
TATCGTTTCTTCTCTTCCAGTGTTTCCGAGTCACGTGGCACGAGTCCCTCGCCTAAGCAAGAATCTTCAAGAGCACCAAG
GCAAACTGAGGAGGGAGAGGAGCTGTTTAGAATGCAAGATGAAGAGAAGCTTAAGCTACTCTCGTTGATAAAGAATCTTA
AAGAATCGGAAGCTATCAAGCGAGAGGACCCATTGTTTGATATAACTATGAAGCTCGTGATTTCCTCGATGGCCATGTTA
CTTGTCTGGACTGTCTCAGACATACTATTGATGGAGTAAGATTTTTTTTTCCNGATGCACTGATGTAATAAGATCCGTAT
GGGCACNTAAGTGTAAGTAATTAGGTGTTCTATATATTCCGTTATTTGAACACTCGTCCTGTGGTTATTTATCTACTACT
ACGTAGTCATGCGTGATGTCTCAACAGCGCGATTTCACGCATGAATTCTCTCAACAACGCGATTTCACGCATGAATTCTC
TTGGATGGTCCCTTTGGGACTACTCCAGATGGCGGTGTATT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.18604.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis