Browse Element(s) Details


Os.18616.1.S1_at

Description gb:AK064566.1
DB_XREF= gi:32974584
TID=Os.18616.1
CNT=18
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.18616 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-112-D04, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-112-D04, full insert sequence.
FL= gb:AK064566.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g1039011/11cleavage and polyadenylation specificity factor, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g10350OsAffx.5279.1.S1_at11/117+5550354..5555435S1 RNA binding domain containing protein, expressed
LOC_Os07g10350OsAffx.5279.1.S1_x_at11/117+5550354..5555435S1 RNA binding domain containing protein, expressed
LOC_Os07g10350Os.48189.1.S1_at9/117+5550354..5555435S1 RNA binding domain containing protein, expressed
LOC_Os07g10360OsAffx.28385.2.S1_x_at1/117+5557080..5557649hypothetical protein
LOC_Os07g10370OsAffx.28385.2.S1_x_at11/117+5563788..5564315hypothetical protein
LOC_Os07g10380OsAffx.28386.1.S1_at11/117+5564976..5565440hypothetical protein
LOC_Os07g10390Os.18616.1.S1_at11/117+5565871..5574914cleavage and polyadenylation specificity factor, putative, expressed
LOC_Os07g10390OsAffx.12779.1.S1_at1/117+5565871..5574914cleavage and polyadenylation specificity factor, putative, expressed
LOC_Os07g10400OsAffx.5280.1.S1_at11/117+5580700..5585843Protein kinase domain containing protein, expressed
LOC_Os07g10400Os.14644.2.S1_x_at5/117+5580700..5585843Protein kinase domain containing protein, expressed
LOC_Os07g10410OsAffx.5281.1.S1_at11/117+5592210..5593010AP2 domain containing protein
LOC_Os07g10420Os.11633.3.S1_at11/117+5597010..5599089expressed protein
LOC_Os07g10420OsAffx.28387.1.S1_s_at11/117+5597010..5599089expressed protein

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Gene Ontology Classification
GO idTypeName
GO:0005634cellular_componentnucleus
GO:0003676molecular_functionnucleic acid binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.18616.1.S1_at--163--1891Chr07:5566386..5566410 (25 bp)
ACGATATCTCGGTTTTCCAGGTCAT
LOC_Os07g10390
Os.18616.1.S1_at--624--6211Chr07:5566326..5566350 (25 bp)
GAGGCGTTCAACAATCCATTCAACC
LOC_Os07g10390
Os.18616.1.S1_at--233--7831Chr07:5566300..5566324 (25 bp)
GGTCACTGTTCTTACCGACATGGCT
LOC_Os07g10390
Os.18616.1.S1_at--107--10211Chr07:5566259..5566283 (25 bp)
TATTTGGGTGGCATCATCGCTGAAT
LOC_Os07g10390
Os.18616.1.S1_at--948--4071Chr07:5566222..5566246 (25 bp)
CGAGCACCGAGTTGTTGCAGCTGAA
LOC_Os07g10390
Os.18616.1.S1_at--259--7931Chr07:5566038..5566062 (25 bp)
GGATACAAATCCTTTTGCCCAGTGA
LOC_Os07g10390
Os.18616.1.S1_at--1141--7351Chr07:5565999..5566023 (25 bp)
GTGAACGCATAATCTCCATTGTGGT
LOC_Os07g10390
Os.18616.1.S1_at--316--7091Chr07:5565970..5565994 (25 bp)
GTCAACTTGCTTCAGGTTATGCCAG
LOC_Os07g10390
Os.18616.1.S1_at--1100--10271Chr07:5565923..5565947 (25 bp)
TTTCCTGAAATCTGACGCTTGCTTG
LOC_Os07g10390
Os.18616.1.S1_at--299--4931Chr07:5565907..5565931 (25 bp)
GCTTGCTTGATCTTTGTGCCTTAAT
LOC_Os07g10390
Os.18616.1.S1_at--1073--331Chr07:5565884..5565908 (25 bp)
ATAAATTTGCTCTCTCCAACCATAG
LOC_Os07g10390
Target Sequence 
ACGATATCTCGGTTTTCCAGGTCATGCGAGCATTAGAGAGGGTGCATTACGCACTCAACTGAGGCGTTCAACAATCCATT
CAACCCGGTCACTGTTCTTACCGACATGGCTGTCTCCAACCTGCTGATATTTGGGTGGCATCATCGCTGAATTTGGATCC
GAGCCGAGCACCGAGTTGTTGCAGCTGAAGCTGCTACTGGAGCACATACCCAGAACATACCAAATCTCAGCTGTAGTGAG
GTGCTGTGTTTTGCTGTGGGATGATAGGCCCATCTGATGTCGCAATAGTGTGTCATTGCTCTAGTGNAATCTTTGTAAAT
AACGAATAATATTTTGGCAGAAGGATGTGGATACAAATCCTTTTGCCCAGTGAAAGGAACAACCCTCGTGAACGCATAAT
CTCCATTGTGGTATATGTCAACTTGCTTCAGGTTATGCCAGTTGAAATAGGGATCTGGAAACATTTCCTGAAATCTGACG
CTTGCTTGATCTTTGTGCCTTAATAAATTTGCTCTCTCCAACCATAG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.18616.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis