Browse Element(s) Details


Os.18633.1.S1_at

Description gb:AK066885.1
DB_XREF= gi:32976903
TID=Os.18633.1
CNT=4
FEA=FLmRNA
TIER=FL
STK=2
UG=Os.18633 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013088G18, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013088G18, full insert sequence.
FL= gb:AK066885.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g4371011/11phosphoenolpyruvate carboxylase kinase 4, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g43680Os.3388.2.S1_a_at11/114+25623950..25625775Myb-related protein Myb4, putative, expressed
LOC_Os04g43680Os.3388.1.S1_x_at11/114+25623950..25625775Myb-related protein Myb4, putative, expressed
LOC_Os04g43690Os.15788.1.S1_at11/114+25636564..25640943expressed protein
LOC_Os04g43700Os.17432.1.S1_at5/114+25641276..25646478Glycosyl transferase family 8 protein, expressed
LOC_Os04g43710Os.18633.1.S1_at11/114+25648722..25650103phosphoenolpyruvate carboxylase kinase 4, putative, expressed
LOC_Os04g43720OsAffx.10048.1.S1_x_at1/114+25653952..25659331retrotransposon protein, putative, Ty1-copia subclass
LOC_Os04g43720OsAffx.26928.1.S1_at1/114+25653952..25659331retrotransposon protein, putative, Ty1-copia subclass
LOC_Os04g43730OsAffx.26450.1.S1_at11/114+25665811..25669202Protein kinase domain containing protein

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Gene Ontology Classification
GO idTypeName
GO:0006468biological_processprotein amino acid phosphorylation
GO:0009738biological_processabscisic acid mediated signaling
GO:0004611molecular_functionphosphoenolpyruvate carboxykinase activity
GO:0004672molecular_functionprotein kinase activity
GO:0004685molecular_functioncalcium- and calmodulin-dependent protein kinase activity
GO:0016301molecular_functionkinase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.18633.1.S1_at--1024--7731Chr04:25649371..25649395 (25 bp)
GGTGGTCATGTACGTGCTCCTCACC
LOC_Os04g43710
Os.18633.1.S1_at--787--8871Chr04:25649527..25649551 (25 bp)
TGATGTGCCGCGACGTCTACAGGAG
LOC_Os04g43710
Os.18633.1.S1_at--535--5951Chr04:25649562..25649742 (25 bp)
GAGCAAGTCCTGAGGCACCCGTGGA
LOC_Os04g43710
Os.18633.1.S1_at--114--4911Chr04:25649814..25649838 (25 bp)
GCTTCTTGTGTATACGCCTTTGTAA
LOC_Os04g43710
Os.18633.1.S1_at--292--7031Chr04:25649835..25649859 (25 bp)
GTAAATGCGAGTACGCCTACGAGAG
LOC_Os04g43710
Os.18633.1.S1_at--567--7051Chr04:25649900..25649924 (25 bp)
GTAACACTGTATACATCCAACCAGG
LOC_Os04g43710
Os.18633.1.S1_at--954--971Chr04:25649938..25649962 (25 bp)
AGGAGGTCGCTAGCCTCTGTGTTTT
LOC_Os04g43710
Os.18633.1.S1_at--176--9551Chr04:25649973..25649997 (25 bp)
TCTTAAGCCCTTTTTAGTTGCCGCT
LOC_Os04g43710
Os.18633.1.S1_at--645--10691Chr04:25650000..25650024 (25 bp)
TTGCCTGAGAGAAGAACGCTTGCTT
LOC_Os04g43710
Os.18633.1.S1_at--820--10711Chr04:25650019..25650043 (25 bp)
TTGCTTGTGTAATGGGAGTGCTGCT
LOC_Os04g43710
Os.18633.1.S1_at--352--9131Chr04:25650040..25650064 (25 bp)
TGCTGTGAATACTAACCCTGCTTGT
LOC_Os04g43710
Target Sequence 
GGTGGTCATGTACGTGCTCCTCACCGGCGGCGCGCTCCCGTTCGGCGGCGAGACGGCCTCCGACGTGTTCGCCGCCGTCC
TGCGGGGCAACCTGAGGTTCCCGCCGAGGCTGTTCTCCGGCGTGTCGCCGGCTGCCAAGGACCTGATGCGGCGGATGATG
TGCCGCGACGTCTACAGGAGGTTCTCCGCCGAGCAAGTCCTGAGGCACCCGTGGATCGTGAGCGGAGGAGGAGCACGCGA
TGTGCANCCGACCTNAAGAATCCNTATCAGATTTCCAAATAATNCGGCTTCTTGTGTATACGCCTTTGTAAATGCGAGTA
CGCCTACGAGAGAGGAAGATGCATTGGTAGAAGAAGTAGAGANTGGAGAGTAGTAACACTGTATACATCCAACCAGGAGT
GGTGAGGAGGAGGAGGTCGCTAGCCTCTGTGTTTTTTTCGCTCTTTCTTAAGCCCTTTTTAGTTGCCGCTTTTTGCCTGA
GAGAAGAACGCTTGCTTGTGTAATGGGAGTGCTGCTGTGAATACTAACCCTGCTTGT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.18633.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis