Browse Element(s) Details


OsAffx.26450.1.S1_at

Description tigr:9632.m04193
TID=OsAffx.26450.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Protein kinase domain, putative
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g4373011/11Protein kinase domain containing protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g43690Os.15788.1.S1_at11/114+25636564..25640943expressed protein
LOC_Os04g43700Os.17432.1.S1_at5/114+25641276..25646478Glycosyl transferase family 8 protein, expressed
LOC_Os04g43710Os.18633.1.S1_at11/114+25648722..25650103phosphoenolpyruvate carboxylase kinase 4, putative, expressed
LOC_Os04g43720OsAffx.10048.1.S1_x_at1/114+25653952..25659331retrotransposon protein, putative, Ty1-copia subclass
LOC_Os04g43720OsAffx.26928.1.S1_at1/114+25653952..25659331retrotransposon protein, putative, Ty1-copia subclass
LOC_Os04g43730OsAffx.26450.1.S1_at11/114+25665811..25669202Protein kinase domain containing protein
LOC_Os04g43740OsAffx.14257.1.S1_x_at11/114+25677699..25678088auxin-responsive family protein, putative, expressed
LOC_Os04g43740OsAffx.14257.1.S1_at11/114+25677699..25678088auxin-responsive family protein, putative, expressed
LOC_Os04g43750Os.23443.1.S1_at10/114+25679149..25683278Adenosine kinase 2, putative, expressed
LOC_Os04g43760Os.37893.1.S1_at11/114+25687775..25690981Phenylalanine ammonia-lyase, putative, expressed
LOC_Os04g43760OsAffx.27816.1.S1_at1/114+25687775..25690981Phenylalanine ammonia-lyase, putative, expressed
LOC_Os04g43760Os.9330.1.S1_x_at1/114+25687775..25690981Phenylalanine ammonia-lyase, putative, expressed
LOC_Os04g43770Os.24233.2.S1_at1/114+25693037..25696005expressed protein

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Gene Ontology Classification
GO idTypeName
GO:0006468biological_processprotein amino acid phosphorylation
GO:0007166biological_processcell surface receptor linked signal transduction
GO:0009751biological_processresponse to salicylic acid stimulus
GO:0009826biological_processunidimensional cell growth
GO:0048527biological_processlateral root development
GO:0005886cellular_componentplasma membrane
GO:0009505cellular_componentcell wall (sensu Magnoliophyta)
GO:0004674molecular_functionprotein serine/threonine kinase activity
GO:0016301molecular_functionkinase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.26450.1.S1_at--315--5651Chr04:25666363..25666387 (25 bp)
GACAGACTTCGGAGCATCTATACTA
LOC_Os04g43730
OsAffx.26450.1.S1_at--419--9551Chr04:25666347..25666371 (25 bp)
TCTATACTAGCTCCATCCGACAAAG
LOC_Os04g43730
OsAffx.26450.1.S1_at--340--1031Chr04:25666300..25666324 (25 bp)
AGGTACATGTGGCTATCTCGATCCC
LOC_Os04g43730
OsAffx.26450.1.S1_at--689--5131Chr04:25666267..25666291 (25 bp)
GCAAACGTGCCAATTGACCGACAAG
LOC_Os04g43730
OsAffx.26450.1.S1_at--16--1551Chr04:25666230..25666254 (25 bp)
AGCTTCGGTGTTATCCTTCTAGAGA
LOC_Os04g43730
OsAffx.26450.1.S1_at--515--1351Chr04:25666210..25666234 (25 bp)
AGAGATTCTCACAGGCCAAGTGCCA
LOC_Os04g43730
OsAffx.26450.1.S1_at--65--7111Chr04:25666191..25666215 (25 bp)
GTGCCACTGAAGCTCGAAGGACCTG
LOC_Os04g43730
OsAffx.26450.1.S1_at--959--9591Chr04:25666149..25666173 (25 bp)
TCATCAGTTTTCCTATCTGCCATGA
LOC_Os04g43730
OsAffx.26450.1.S1_at--877--5571Chr04:25665993..25666017 (25 bp)
GAAATCACCGACGAGCTGGGCCGAT
LOC_Os04g43730
OsAffx.26450.1.S1_at--561--10311Chr04:25665959..25665983 (25 bp)
TTTCACTGCATCCTTGGGTACAAGT
LOC_Os04g43730
OsAffx.26450.1.S1_at--376--6031Chr04:25665927..25665951 (25 bp)
GAGATGGCACCAGAGAACCTTCTTG
LOC_Os04g43730
Target Sequence 
GACAGACTTCGGAGCATCTATACTAGCTCCATCCGACAAAGAGCAGTTTGTCACAATGGTTCAAGGTACATGTGGCTATC
TCGATCCCGAATACATGCAAACGTGCCAATTGACCGACAAGAGCGATGTGTATAGCTTCGGTGTTATCCTTCTAGAGATT
CTCACAGGCCAAGTGCCACTGAAGCTCGAAGGACCTGCGATACAAAGAAGCTTGTCATCAGTTTTCCTATCTGCCATGAA
GGGGAACAATCTTGACTCGGTGTTGGTGAGCGACATAAAAGGCCAAGAGAGCATGGAACTAATCGGGGGACTTGCTGAGC
TAGCCAAGCAATGCCTTGATATGTGCGGCGCCAACAGGCCATCGATGAAAGAAATCACCGACGAGCTGGGCCGATTGAGG
AAGCTTTCACTGCATCCTTGGGTACAAGTCGATGCAGAGATGGCACCAGAGAACCTTCTTG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.26450.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis