Browse Element(s) Details


OsAffx.27816.1.S1_at

Description tigr:9634.m02477
TID=OsAffx.27816.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Similar to xylanase inhibitor protein I
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os06g2501011/11Xylanase inhibitor protein 1 precursor, putative, expressed
LOC_Os04g437601/11Phenylalanine ammonia-lyase, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os06g24960NANA6+14621848..14624451retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os06g24970NANA6+14624801..14625994hypothetical protein
LOC_Os06g24980OsAffx.8455.1.S1_at8/116+14629292..14638773transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os06g24980OsAffx.8589.1.S1_at1/116+14629292..14638773transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os06g24990OsAffx.27815.1.S1_s_at11/116+14640580..14641576Xylanase inhibitor protein 1 precursor, putative, expressed
LOC_Os06g25000NANA6+14644242..14645108hypothetical protein
LOC_Os06g25010OsAffx.27816.1.S1_at11/116+14646301..14647092Xylanase inhibitor protein 1 precursor, putative, expressed
LOC_Os06g25020OsAffx.15604.1.S1_at11/116+14649192..14649503hypothetical protein
LOC_Os06g25030OsAffx.4932.1.S1_at10/116+14652218..14654262hypothetical protein
LOC_Os06g25040NANA6+14656491..14656949retrotransposon protein, putative, unclassified
LOC_Os06g25050NANA6+14657163..14660839retrotransposon protein, putative, unclassified
LOC_Os06g25060Os.51990.1.S1_at1/116+14661249..14663020retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os06g25070NANA6+14665932..14666573retrotransposon protein, putative, Ty3-gypsy subclass

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Gene Ontology Classification
GO idTypeName
GO:0006952biological_processdefense response
GO:0006979biological_processresponse to oxidative stress
GO:0009611biological_processresponse to wounding
GO:0009699biological_processphenylpropanoid biosynthesis
GO:0004553molecular_functionhydrolase activity, hydrolyzing O-glycosyl compounds
GO:0045548molecular_functionphenylalanine ammonia-lyase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.27816.1.S1_at--980--7571Chr06:14646861..14646885 (25 bp)
GGGCTCTACACCATGGTCATCATGT
LOC_Os06g25010
OsAffx.27816.1.S1_at--601--7231Chr06:14646838..14646862 (25 bp)
GTCCTTCCTCAACGTGTACGGACAC
LOC_Os06g25010
OsAffx.27816.1.S1_at--409--9931Chr06:14646822..14646846 (25 bp)
TACGGACACGGCAAGTACAACCTCG
LOC_Os06g25010
OsAffx.27816.1.S1_at--1060--9711Chr06:14646758..14646782 (25 bp)
TCAAGCACTGCCAGTTCATCGGCGT
LOC_Os06g25010
OsAffx.27816.1.S1_at--795--10612Chr06:14646708..14646732 (25 bp)
TTCGGCAACGGCTACTCGCTGCCGT
LOC_Os06g25010
OsAffx.27816.1.S1_at--781--2611Chr06:14646681..14646705 (25 bp)
AACCGATCGGCGCTCGAGCTCTTCG
LOC_Os06g25010
OsAffx.27816.1.S1_at--933--5431Chr06:14646646..14646670 (25 bp)
GAACGCCTACTTCGGTGGGTCCAAG
LOC_Os06g25010
OsAffx.27816.1.S1_at--1109--7211Chr06:14646579..14646603 (25 bp)
GTCGACCTGTTCCTGGAGCACGGCA
LOC_Os06g25010
OsAffx.27816.1.S1_at--331--2131Chr06:14646545..14646569 (25 bp)
ACAGGTACGACGTGCTGGCGCTGGA
LOC_Os06g25010
OsAffx.27816.1.S1_at--253--9371Chr06:14646404..14646428 (25 bp)
TCGAGCGCATCCACATCCGGATCTA
LOC_Os06g25010
OsAffx.27816.1.S1_at--517--571Chr06:14646396..14646420 (25 bp)
ATCCACATCCGGATCTACGACGACG
LOC_Os06g25010
Target Sequence 
GGGCTCTACACCATGGTCATCATGTCCTTCCTCAACGTGTACGGACACGGCAAGTACAACCTCGACCTCTCGGGACACCC
CATAGCCGGCATCGGCGACGACATCAAGCACTGCCAGTTCATCGGCGTCCCGGTGTCGCTCTCCATCGGCGGCTTCGGCA
ACGGCTACTCGCTGCCGTCCAACCGATCGGCGCTCGAGCTCTTCGACTACCTCTGGAACGCCTACTTCGGTGGGTCCAAG
GCGGGCGTGTACCGCCCCTTCGGCGACGCGTGGCTCGACGGCGTCGACCTGTTCCTGGAGCACGGCACGCCCGCGGACAG
GTACGACGTGCTGGCGCTGGAGCTCGCCAAGCACAACATCCGCGGCGCGCCCGGGAAGCCGCTGCACCTGACAGCGACGC
CGCGGTGCACGTTCCCGCCCAGCAGCTACCTCGGCCGCGCTGTGGCGACGGGGATCTTCGAGCGCATCCACATCCGGATC
TACGACGACG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.27816.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis