Browse Element(s) Details


OsAffx.4932.1.S1_at

Description tigr:9634.m02479
TID=OsAffx.4932.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os06g2503010/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os06g24980OsAffx.8455.1.S1_at8/116+14629292..14638773transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os06g24980OsAffx.8589.1.S1_at1/116+14629292..14638773transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os06g24990OsAffx.27815.1.S1_s_at11/116+14640580..14641576Xylanase inhibitor protein 1 precursor, putative, expressed
LOC_Os06g25000NANA6+14644242..14645108hypothetical protein
LOC_Os06g25010OsAffx.27816.1.S1_at11/116+14646301..14647092Xylanase inhibitor protein 1 precursor, putative, expressed
LOC_Os06g25020OsAffx.15604.1.S1_at11/116+14649192..14649503hypothetical protein
LOC_Os06g25030OsAffx.4932.1.S1_at10/116+14652218..14654262hypothetical protein
LOC_Os06g25040NANA6+14656491..14656949retrotransposon protein, putative, unclassified
LOC_Os06g25050NANA6+14657163..14660839retrotransposon protein, putative, unclassified
LOC_Os06g25060Os.51990.1.S1_at1/116+14661249..14663020retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os06g25070NANA6+14665932..14666573retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os06g25080Os.56292.1.S1_x_at1/116+14672909..14674347retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os06g25080Os.56292.1.S1_at1/116+14672909..14674347retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os06g25090NANA6+14675199..14675654hypothetical protein

Select all/Clear all

Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.4932.1.S1_at--146--4011Chr06:14653443..14653467 (25 bp)
CGTCTCCTCCTTGGCAAGAGTCAAG
LOC_Os06g25030
OsAffx.4932.1.S1_at--185--2671Chr11:24051612..24051632 (21 bp)
AAGCGAGCGGACTCCATTGGCCGTT
NONE
OsAffx.4932.1.S1_at--160--3611Chr06:14653479..14653781 (25 bp)
CATTGGCCGTTGTAAGCTGCGGGCT
LOC_Os06g25030
OsAffx.4932.1.S1_at--488--3831Chr06:14653773..14653797 (25 bp)
CTGCGGGCTGATTAGAGCTCGGTTT
LOC_Os06g25030
OsAffx.4932.1.S1_at--438--3771Chr06:14653790..14653814 (25 bp)
CTCGGTTTGAAGAGACCCAGCGTCA
LOC_Os06g25030
OsAffx.4932.1.S1_at--380--4051Chr06:14653833..14653857 (25 bp)
CGATGCCATTTCTCCAGCAATGTAT
LOC_Os06g25030
OsAffx.4932.1.S1_at--1002--6371Chr06:14653999..14654023 (25 bp)
GATCCGAGCTCTACTCAGGTTAACA
LOC_Os06g25030
OsAffx.4932.1.S1_at--790--9831Chr06:14654024..14654048 (25 bp)
TAAACCGGCTTCGAGCTAGGGAGGC
LOC_Os06g25030
OsAffx.4932.1.S1_at--1055--1091Chr06:14654072..14654096 (25 bp)
AGTGGAGGGCTGACATATCTTCGCA
LOC_Os06g25030
OsAffx.4932.1.S1_at--300--2411Chr06:14654164..14654188 (25 bp)
AAACACCTCTTGGACCTGAGCAAGT
LOC_Os06g25030
OsAffx.4932.1.S1_at--630--8991Chr06:14654192..14654216 (25 bp)
TGAAGATGATCCCTAGTACCGACGC
LOC_Os06g25030
Target Sequence 
CGTCTCCTCCTTGGCAAGAGTCAAGCGAGCGGACTCCATTGGCCGTTGTAAGCTGCGGGCTGATTAGAGCTCGGTTTGAA
GAGACCCAGCGTCAGATCCCAGACACCTATGCCGATGCCATTTCTCCAGCAATGTATTTAGAGCAGCATCGGCTTAAATT
GGAGAGGGCGATGCAGAGGATCGCCGACAGACGTGAGAGGGCCGAGTTGGAGACCATGATTCAAACGAATCAGCTATCTA
TCAAAGGAGAGAAAGCCAAACTTGATGAGATGGAGGCCGATCCGAGCTCTACTCAGGTTAACATAAACCGGCTTCGAGCT
AGGGAGGCGGAATTGGTCGCCGAGCTTGAGAAGTGGAGGGCTGACATATCTTCGCAGGAGAAAAAGCTCGCCAACCTCCC
CAGGGCCATCGAACAACAGAGGCTTAAACTGAAGAAATCTATCAAACACCTCTTGGACCTGAGCAAGTCATTGAAGATGA
TCCCTAGTACCGACGC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.4932.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis