Browse Element(s) Details


OsAffx.27815.1.S1_s_at

Description tigr:9634.m02475
TID=OsAffx.27815.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Similar to xylanase inhibitor protein I
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os06g2499011/11Xylanase inhibitor protein 1 precursor, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os06g24930NANA6+14615411..14616280transposon protein, putative, Ac/Ds sub-class, expressed
LOC_Os06g24950OsAffx.22385.1.S1_x_at3/116+14620186..14621253retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os06g24960NANA6+14621848..14624451retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os06g24970NANA6+14624801..14625994hypothetical protein
LOC_Os06g24980OsAffx.8455.1.S1_at8/116+14629292..14638773transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os06g24980OsAffx.8589.1.S1_at1/116+14629292..14638773transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os06g24990OsAffx.27815.1.S1_s_at11/116+14640580..14641576Xylanase inhibitor protein 1 precursor, putative, expressed
LOC_Os06g25000NANA6+14644242..14645108hypothetical protein
LOC_Os06g25010OsAffx.27816.1.S1_at11/116+14646301..14647092Xylanase inhibitor protein 1 precursor, putative, expressed
LOC_Os06g25020OsAffx.15604.1.S1_at11/116+14649192..14649503hypothetical protein
LOC_Os06g25030OsAffx.4932.1.S1_at10/116+14652218..14654262hypothetical protein
LOC_Os06g25040NANA6+14656491..14656949retrotransposon protein, putative, unclassified
LOC_Os06g25050NANA6+14657163..14660839retrotransposon protein, putative, unclassified
LOC_Os06g25060Os.51990.1.S1_at1/116+14661249..14663020retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os06g25070NANA6+14665932..14666573retrotransposon protein, putative, Ty3-gypsy subclass

Select all/Clear all

Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.27815.1.S1_s_at--595--8631Chr06:14640961..14640985 (25 bp)
TGGGTGCACCCCAAGAACGTCTACT
LOC_Os06g24990
OsAffx.27815.1.S1_s_at--382--8851Chr06:14640888..14640912 (25 bp)
TGATCTGGGACCGATACTACGACAA
LOC_Os06g24990
OsAffx.27815.1.S1_s_at--188--9951Chr06:14640871..14640895 (25 bp)
TACGACAAGCTGAGCAACTACACCA
LOC_Os06g24990
OsAffx.27815.1.S1_s_at--23--2531Chr06:14640856..14640880 (25 bp)
AACTACACCAGCATGGTCAAGGCCT
LOC_Os06g24990
OsAffx.27815.1.S1_s_at--29--7091Chr06:14640841..14640865 (25 bp)
GTCAAGGCCTATGCTTGAGCCTCAT
LOC_Os06g24990
OsAffx.27815.1.S1_s_at--245--8931Chr06:14640826..14640850 (25 bp)
TGAGCCTCATCTGATCGTGATCGAC
LOC_Os06g24990
OsAffx.27815.1.S1_s_at--745--1511Chr06:14640776..14640800 (25 bp)
AGCAGCATCACTGGCTACTACAAAC
LOC_Os06g24990
OsAffx.27815.1.S1_s_at--445--8311Chr06:14640764..14640788 (25 bp)
GGCTACTACAAACTCTGTCTGTCGA
LOC_Os06g24990
OsAffx.27815.1.S1_s_at--20--8731Chr06:14640749..14640773 (25 bp)
TGTCTGTCGAATACTCTGTCTGTCA
LOC_Os06g24990
OsAffx.27815.1.S1_s_at--696--1751Chr06:14640710..14640734 (25 bp)
ACCTCGTCTATGTCCGTGTATGCAT
LOC_Os06g24990
OsAffx.27815.1.S1_s_at--674--7251Chr06:14640699..14640723 (25 bp)
GTCCGTGTATGCATTTGTGCTTGCA
LOC_Os06g24990
Target Sequence 
TGGGTGCACCCCAAGAACGTCTACTACGACGTCGCCCCGTCCACGCAGAAGGCGGACAACTACGGCGGCTTCATGATCTG
GGACCGATACTACGACAAGCTGAGCAACTACACCAGCATGGTCAAGGCCTATGCTTGAGCCTCATCTGATCGTGATCGAC
TTCTCCCATCCGTGCCAGTAGGCCAAGCAGCATCACTGGCTACTACAAACTCTGTCTGTCGAATACTCTGTCTGTCAATC
GCCTATCCTCCACCTCGTCTATGTCCGTGTATGCATTTGTGCTTGCA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.27815.1.S1_s_at     

Putative homologies in rice

Putative homologies in arabidopsis