Browse Element(s) Details


OsAffx.14257.1.S1_x_at

Description tigr:9632.m04194
TID=OsAffx.14257.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Auxin responsive protein, putative
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g4374011/11auxin-responsive family protein, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g43720OsAffx.10048.1.S1_x_at1/114+25653952..25659331retrotransposon protein, putative, Ty1-copia subclass
LOC_Os04g43720OsAffx.26928.1.S1_at1/114+25653952..25659331retrotransposon protein, putative, Ty1-copia subclass
LOC_Os04g43730OsAffx.26450.1.S1_at11/114+25665811..25669202Protein kinase domain containing protein
LOC_Os04g43740OsAffx.14257.1.S1_x_at11/114+25677699..25678088auxin-responsive family protein, putative, expressed
LOC_Os04g43740OsAffx.14257.1.S1_at11/114+25677699..25678088auxin-responsive family protein, putative, expressed
LOC_Os04g43750Os.23443.1.S1_at10/114+25679149..25683278Adenosine kinase 2, putative, expressed
LOC_Os04g43760Os.37893.1.S1_at11/114+25687775..25690981Phenylalanine ammonia-lyase, putative, expressed
LOC_Os04g43760OsAffx.27816.1.S1_at1/114+25687775..25690981Phenylalanine ammonia-lyase, putative, expressed
LOC_Os04g43760Os.9330.1.S1_x_at1/114+25687775..25690981Phenylalanine ammonia-lyase, putative, expressed
LOC_Os04g43770Os.24233.2.S1_at1/114+25693037..25696005expressed protein
LOC_Os04g43780Os.27691.2.S1_x_at2/114+25701382..25702302retrotransposon protein, putative, Ty3-gypsy subclass

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Gene Ontology Classification
GO idTypeName
GO:0009733biological_processresponse to auxin stimulus
GO:0005516molecular_functioncalmodulin binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.14257.1.S1_x_at--1044--4431Chr04:25677735..25677759 (25 bp)
GCCTTCCTCCACTCATGGAAGAAGC
LOC_Os04g43740
OsAffx.14257.1.S1_x_at--379--3331Chr04:25677744..25677768 (25 bp)
CACTCATGGAAGAAGCTCGGCGCCG
LOC_Os04g43740
OsAffx.14257.1.S1_x_at--673--4511Chr04:25677889..25677913 (25 bp)
GCCGCTACGTCGTCAGGGTGTCGTC
LOC_Os04g43740
OsAffx.14257.1.S1_x_at--32--1911Chr04:25677895..25677919 (25 bp)
ACGTCGTCAGGGTGTCGTCCCTCGA
LOC_Os04g43740
OsAffx.14257.1.S1_x_at--222--4151Chr04:25677950..25677974 (25 bp)
CGCCAGGGAGGAGTACCAGTTCGCC
LOC_Os04g43740
OsAffx.14257.1.S1_x_at--267--4331Chr04:25677952..25677976 (25 bp)
CCAGGGAGGAGTACCAGTTCGCCGC
LOC_Os04g43740
OsAffx.14257.1.S1_x_at--393--1071Chr04:25677954..25677978 (25 bp)
AGGGAGGAGTACCAGTTCGCCGCCG
LOC_Os04g43740
OsAffx.14257.1.S1_x_at--84--5811Chr04:25677984..25678008 (25 bp)
GACGCGAGGCTGTGCATACCCTGCG
LOC_Os04g43740
OsAffx.14257.1.S1_x_at--524--6211Chr04:25677989..25678013 (25 bp)
GAGGCTGTGCATACCCTGCGACGAG
LOC_Os04g43740
OsAffx.14257.1.S1_x_at--114--8691Chr04:25677994..25678018 (25 bp)
TGTGCATACCCTGCGACGAGGACAT
LOC_Os04g43740
OsAffx.14257.1.S1_x_at--255--9491Chr04:25678033..25678057 (25 bp)
TCTGCCATGTCGACTCCAAGCAGGA
LOC_Os04g43740
Target Sequence 
GCCTTCCTCCACTCATGGAAGAAGCTCGGCGCCGCCGCCGCCGCCGCGGCCCCGGCGGCCGGCGAGTGGGCTCCTCTCGA
CGGTGACGGCGAGGGCGCCATCCCGAGCGACGTGCCCCGGGGCCACACGGTGGTGTACGTCGGCGAGGAGCTGCGCCGCT
ACGTCGTCAGGGTGTCGTCCCTCGACCACCCGCTGTTCCGCGAGCTGCTCGACCGCGCCAGGGAGGAGTACCAGTTCGCC
GCCGGCGCCGACGCGAGGCTGTGCATACCCTGCGACGAGGACATCTTCCTCGGCGTCCTCTGCCATGTCGACTCCAAGCA
GGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.14257.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis