Browse Element(s) Details


OsAffx.26928.1.S1_at

Description tigr:9633.m01514
TID=OsAffx.26928.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Similar to GA 3beta-hydroxylase
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g1690011/11hypothetical protein
LOC_Os04g437201/11retrotransposon protein, putative, Ty1-copia subclass
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g16850OsAffx.447.1.S1_at7/115+9580962..9585512retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os05g16850Os.46715.1.S1_x_at1/115+9580962..9585512retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os05g16850Os.52609.1.S1_at1/115+9580962..9585512retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os05g16860NANA5+9591539..9592345retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os05g16869NANA5+9593977..9594402hypothetical protein
LOC_Os05g16880NANA5+9597658..9599007retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os05g16889NANA5+9601163..9601588hypothetical protein
LOC_Os05g16900OsAffx.26928.1.S1_at11/115+9605612..9606206hypothetical protein
LOC_Os05g16910Os.38395.3.S1_x_at11/115+9608401..9615573transposon protein, putative, Mutator sub-class
LOC_Os05g16910Os.38395.2.S1_x_at9/115+9608401..9615573transposon protein, putative, Mutator sub-class
LOC_Os05g16910Os.38395.4.S1_x_at8/115+9608401..9615573transposon protein, putative, Mutator sub-class
LOC_Os05g16910Os.38395.1.S1_at7/115+9608401..9615573transposon protein, putative, Mutator sub-class
LOC_Os05g16920OsAffx.26929.1.S1_at11/115+9623232..9624018SHR5-receptor-like kinase, putative
LOC_Os05g16930OsAffx.26937.3.S1_at11/115+9627293..9634211Protein kinase domain containing protein, expressed
LOC_Os05g16930OsAffx.5776.1.S1_x_at1/115+9627293..9634211Protein kinase domain containing protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.26928.1.S1_at--558--1873Chr12:3686973..3686997 (25 bp)
ACGAGCTGCTGGAGTTGTTCCTCAG
NONE
OsAffx.26928.1.S1_at--491--4312Chr05:9606077..9606101 (25 bp)
GCGACGATGCACTGGTACCCGAGGT
LOC_Os05g16900
OsAffx.26928.1.S1_at--100--5891Chr05:9606037..9606061 (25 bp)
GAGCGCTGGGACTCAGTGCACACAG
LOC_Os05g16900
OsAffx.26928.1.S1_at--721--8611Chr05:9606031..9606055 (25 bp)
TGGGACTCAGTGCACACAGCGACTC
LOC_Os05g16900
OsAffx.26928.1.S1_at--400--1651Chr05:9606014..9606038 (25 bp)
AGCGACTCCGGCTTCTGCTCTAGAG
LOC_Os05g16900
OsAffx.26928.1.S1_at--644--9091Chr05:9605999..9606023 (25 bp)
TGCTCTAGAGCATCGTGCCAGGGCT
LOC_Os05g16900
OsAffx.26928.1.S1_at--91--10811Chr05:9605836..9605860 (25 bp)
TTGTCAACCGCAACCGCGATAGGAT
LOC_Os05g16900
OsAffx.26928.1.S1_at--278--6491Chr05:9605819..9605843 (25 bp)
GATAGGATATCGCTCGGATACTTCC
LOC_Os05g16900
OsAffx.26928.1.S1_at--385--7953Chr12:3687321..3687345 (25 bp)
GGATATCGCTCGGATACTTCCTCGG
NONE
OsAffx.26928.1.S1_at--635--8431Chr05:9605792..9605816 (25 bp)
GGCCTACCAGCCGAACGTCAAGGTT
LOC_Os05g16900
OsAffx.26928.1.S1_at--1010--4331Chr05:9605786..9605810 (25 bp)
CCAGCCGAACGTCAAGGTTGCCGGA
LOC_Os05g16900
Target Sequence 
ACGAGCTGCTGGAGTTGTTCCTCAGGGCGGGCACTGGGTCTCACCGGAGTCGAGGTGGAAGAAGATGACGGCGACGATGC
ACTGGTACCCGAGGTGCCCGGACCTGCGGCGAGCGCTGGGACTCAGTGCACACAGCGACTCCGGCTTCTGCTCTAGAGCA
TCGTGCCAGGGCTGCAGCTGTTCCGGCGGGGACCAGACCGCGTCTACCACCGCGCCGTTGTCAACCGCAACCGCGATAGG
ATATCGCTCGGATACTTCCTCGGCCTACCAGCCGAACGTCAAGGTTGCCGGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.26928.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis