Browse Element(s) Details


OsAffx.26937.3.S1_at

Description tigr:9633.m01517
TID=OsAffx.26937.3
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Protein kinase domain, putative
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g1693011/11Protein kinase domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g16900OsAffx.26928.1.S1_at11/115+9605612..9606206hypothetical protein
LOC_Os05g16910Os.38395.3.S1_x_at11/115+9608401..9615573transposon protein, putative, Mutator sub-class
LOC_Os05g16910Os.38395.2.S1_x_at9/115+9608401..9615573transposon protein, putative, Mutator sub-class
LOC_Os05g16910Os.38395.4.S1_x_at8/115+9608401..9615573transposon protein, putative, Mutator sub-class
LOC_Os05g16910Os.38395.1.S1_at7/115+9608401..9615573transposon protein, putative, Mutator sub-class
LOC_Os05g16920OsAffx.26929.1.S1_at11/115+9623232..9624018SHR5-receptor-like kinase, putative
LOC_Os05g16930OsAffx.26937.3.S1_at11/115+9627293..9634211Protein kinase domain containing protein, expressed
LOC_Os05g16930OsAffx.5776.1.S1_x_at1/115+9627293..9634211Protein kinase domain containing protein, expressed
LOC_Os05g16940NANA5+9636147..9637063retrotransposon protein, putative, unclassified
LOC_Os05g16950NANA5+9640552..9644362retrotransposon protein, putative, unclassified
LOC_Os05g16960NANA5+9646500..9654217retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os05g16970NANA5+9658856..9661626retrotransposon protein, putative, unclassified

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Gene Ontology Classification
GO idTypeName
GO:0006468biological_processprotein amino acid phosphorylation
GO:0016020cellular_componentmembrane
GO:0004672molecular_functionprotein kinase activity
GO:0005515molecular_functionprotein binding
GO:0005524molecular_functionATP binding
GO:0016301molecular_functionkinase activity
GO:0030246molecular_functioncarbohydrate binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.26937.3.S1_at--363--6391Chr05:9633610..9633634 (25 bp)
GATCGAATACAAACAACTCCCTTGA
LOC_Os05g16930
OsAffx.26937.3.S1_at--968--2691Chr05:9633778..9633802 (25 bp)
AAGCTCTGCGCGTAGTCGATCCATG
LOC_Os05g16930
OsAffx.26937.3.S1_at--421--4571Chr05:9633785..9633809 (25 bp)
GCGCGTAGTCGATCCATGTCTTAAG
LOC_Os05g16930
OsAffx.26937.3.S1_at--118--951Chr05:9633823..9633847 (25 bp)
AGGAAGCTTTCAGAGTCATCTGTAT
LOC_Os05g16930
OsAffx.26937.3.S1_at--235--1172Chr05:9633836..9633860 (25 bp)
AGTCATCTGTATTGCTCTCCTTTGT
LOC_Os05g16930
OsAffx.26937.3.S1_at--471--71Chr05:9633846..9633870 (25 bp)
ATTGCTCTCCTTTGTACGCAGGGCT
LOC_Os05g16930
OsAffx.26937.3.S1_at--998--7911Chr05:9633899..9633923 (25 bp)
GGTTGTGGCAATGCTCATCGGAGAT
LOC_Os05g16930
OsAffx.26937.3.S1_at--89--7111Chr05:9633942..9633966 (25 bp)
GTCACGAAGCCGAGCTATATCACCG
LOC_Os05g16930
OsAffx.26937.3.S1_at--154--7651Chr05:9633987..9634011 (25 bp)
GGGAGCAGTAGCTACACCACTAGTA
LOC_Os05g16930
OsAffx.26937.3.S1_at--516--3371Chr05:9634001..9634025 (25 bp)
CACCACTAGTAGCTATGCAGGATCT
LOC_Os05g16930
OsAffx.26937.3.S1_at--1135--991Chr05:9634019..9634043 (25 bp)
AGGATCTAGTAACCCTGAGTTTAGT
LOC_Os05g16930
Target Sequence 
GATCGAATACAAACAACTCCCTTGAGGAAAGCAAGATATATCTCTTGGAGTGGGCCTGGGGTTTGTATGAAATGGGGCAA
GCTCTGCGCGTAGTCGATCCATGTCTTAAGGAATTTGATGAGAAGGAAGCTTTCAGAGTCATCTGTATTGCTCTCCTTTG
TACGCAGGGCTCACCGCACCAGCGGCCGCCAATGTCAAGGGTTGTGGCAATGCTCATCGGAGATGTTGATGTGGCTGAGG
TGGTCACGAAGCCGAGCTATATCACCGAGTGGCAGCTCAGGGATGGTGGGAGCAGTAGCTACACCACTAGTAGCTATGCA
GGATCTAGTAACCCTGAGTTTAGT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.26937.3.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis