Browse Element(s) Details


Os.24233.2.S1_at

Description gb:AK072585.1
DB_XREF= gi:32982608
TID=Os.24233.2
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.24233 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023133I16, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023133I16, full insert sequence.
FL= gb:AK072585.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g437701/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g43730OsAffx.26450.1.S1_at11/114+25665811..25669202Protein kinase domain containing protein
LOC_Os04g43740OsAffx.14257.1.S1_x_at11/114+25677699..25678088auxin-responsive family protein, putative, expressed
LOC_Os04g43740OsAffx.14257.1.S1_at11/114+25677699..25678088auxin-responsive family protein, putative, expressed
LOC_Os04g43750Os.23443.1.S1_at10/114+25679149..25683278Adenosine kinase 2, putative, expressed
LOC_Os04g43760Os.37893.1.S1_at11/114+25687775..25690981Phenylalanine ammonia-lyase, putative, expressed
LOC_Os04g43760OsAffx.27816.1.S1_at1/114+25687775..25690981Phenylalanine ammonia-lyase, putative, expressed
LOC_Os04g43760Os.9330.1.S1_x_at1/114+25687775..25690981Phenylalanine ammonia-lyase, putative, expressed
LOC_Os04g43770Os.24233.2.S1_at1/114+25693037..25696005expressed protein
LOC_Os04g43780Os.27691.2.S1_x_at2/114+25701382..25702302retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os04g43790NANA4+25704870..25706367hypothetical protein
LOC_Os04g43800Os.52536.1.S1_at11/114+25707996..25710635Phenylalanine ammonia-lyase, putative, expressed
LOC_Os04g43810OsAffx.26617.4.S1_x_at8/114+25719081..25722589hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.24233.2.S1_at--252--7011Chr04:25693067..25693091 (25 bp)
GTACTGTTCATTCATCTATGCACAT
LOC_Os04g43770
Os.24233.2.S1_at--1019--10411Chr04:25693029..25693053 (25 bp)
TTATACTGCAGAAATAGCTCACCAT
NONE
Os.24233.2.S1_at--778--9791Chr04:25692971..25692995 (25 bp)
TAACATTGGAACCATGGCCCATGCA
NONE
Os.24233.2.S1_at--548--8412Chr09:3947426..3947450 (25 bp)
GGCCCATGCATCCTTTTATTAGCAA
NONE
Os.24233.2.S1_at--747--10151Chr04:25692931..25692955 (25 bp)
TATTAACTGCTCAGATCGGGCCGGG
NONE
Os.24233.2.S1_at--50--5512Chr04:25692874..25692898 (25 bp)
GAAAAAGTTTTCATGGCATCGTTAG
NONE
Os.24233.2.S1_at--1135--4951Chr04:25692859..25692883 (25 bp)
GCATCGTTAGTTGTTCCCCTGAGAA
NONE
Os.24233.2.S1_at--322--5531Chr04:25692837..25692861 (25 bp)
GAAAAACATATGTATCCACCTGGAT
NONE
Os.24233.2.S1_at--773--8852Chr07:29020880..29020904 (25 bp)
TGATGAGTATAACCCTAATCCTCTC
NONE
Os.24233.2.S1_at--943--3033Chr09:3947608..3947632 (25 bp)
AATCCTCTCATTTTAGTCTTCATTT
NONE
Os.24233.2.S1_at--516--6092Chr07:29020746..29020770 (25 bp)
GAGTACTGACCATTCTCTCATGATA
NONE
Target Sequence 
GTACTGTTCATTCATCTATGCACATATAAATGTGAATTTTATACTGCAGAAATAGCTCACCATTCAGTTTCAATAGTTTA
TGTTAATGTTTCCGTATAACATTGGAACCATGGCCCATGCATCCTTTTATTAGCAATATTAACTGCTCAGATCGGGCCGG
GGGGTGTTATCTTCAGAGGGAGGAAAGTGTGAGGAAAAAGTTTTCATGGCATCGTTAGTTGTTCCCCTGAGAAAAACATA
TGTATCCACCTGGATATTTACAATTTTTTGTTTACCAGAAAGTAAATGATGAGTATAACCCTAATCCTCTCATTTTAGTC
TTCATTTTAGATAAGTATTCCTTATTGAATGTAAAACTGAAGTTACACTGATGCATGAATACATAATTATTCTATGGGAT
TGGTTGTTATTTGTACTACTGAGTACTGACCATTCTCTCATGATA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.24233.2.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis