Browse Element(s) Details


Os.37893.1.S1_at

Description gb:AK100346.1
DB_XREF= gi:32985555
TID=Os.37893.1
CNT=41
FEA=FLmRNA
TIER=FL+Stack
STK=11
UG=Os.37893 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) isolate 24080 phenylalanine ammonia-lyase mRNA, complete cds
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023082J11, full insert sequence.
FL= gb:AY224546.1 gb:AK100346.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g4376011/11Phenylalanine ammonia-lyase, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g43730OsAffx.26450.1.S1_at11/114+25665811..25669202Protein kinase domain containing protein
LOC_Os04g43740OsAffx.14257.1.S1_x_at11/114+25677699..25678088auxin-responsive family protein, putative, expressed
LOC_Os04g43740OsAffx.14257.1.S1_at11/114+25677699..25678088auxin-responsive family protein, putative, expressed
LOC_Os04g43750Os.23443.1.S1_at10/114+25679149..25683278Adenosine kinase 2, putative, expressed
LOC_Os04g43760Os.37893.1.S1_at11/114+25687775..25690981Phenylalanine ammonia-lyase, putative, expressed
LOC_Os04g43760OsAffx.27816.1.S1_at1/114+25687775..25690981Phenylalanine ammonia-lyase, putative, expressed
LOC_Os04g43760Os.9330.1.S1_x_at1/114+25687775..25690981Phenylalanine ammonia-lyase, putative, expressed
LOC_Os04g43770Os.24233.2.S1_at1/114+25693037..25696005expressed protein
LOC_Os04g43780Os.27691.2.S1_x_at2/114+25701382..25702302retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os04g43790NANA4+25704870..25706367hypothetical protein
LOC_Os04g43800Os.52536.1.S1_at11/114+25707996..25710635Phenylalanine ammonia-lyase, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006952biological_processdefense response
GO:0006979biological_processresponse to oxidative stress
GO:0009611biological_processresponse to wounding
GO:0009699biological_processphenylpropanoid biosynthesis
GO:0045548molecular_functionphenylalanine ammonia-lyase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.37893.1.S1_at--418--8051Chr04:25688259..25688283 (25 bp)
GGAGAGCAGGTCGTTCCCGCTGTAC
LOC_Os04g43760
Os.37893.1.S1_at--209--3831Chr04:25688211..25688235 (25 bp)
CTGCGTGTACCTCACCGGAGAGAAG
LOC_Os04g43760
Os.37893.1.S1_at--999--8791Chr04:25688155..25688179 (25 bp)
TGTTCCTGGCCATCAGCGAGCGCAA
LOC_Os04g43760
Os.37893.1.S1_at--1094--4191Chr04:25688052..25688076 (25 bp)
CCGCGAACGCGACAAGATCCAGGAA
LOC_Os04g43760
Os.37893.1.S1_at--248--9011Chr04:25687981..25688005 (25 bp)
TGAAGGCTTCTCGTACGCTCATCAG
LOC_Os04g43760
Os.37893.1.S1_at--798--1511Chr04:25687958..25687982 (25 bp)
AGCAGATTACGTTGTTTCTCCGTCC
LOC_Os04g43760
Os.37893.1.S1_at--83--10371Chr04:25687925..25687949 (25 bp)
TTTTTCCTTTTTGAGCTTGCTGTAT
LOC_Os04g43760
Os.37893.1.S1_at--157--4932Chr11:14884167..14884330 (25 bp)
GCTTGCTGTATTTATCCGTGTTGTA
NONE
Os.37893.1.S1_at--250--6591Chr04:25687877..25687901 (25 bp)
GATTGCTGCTGCAATGCCGTGGCGC
LOC_Os04g43760
Os.37893.1.S1_at--925--871Chr04:25687841..25687865 (25 bp)
ATGGCCTTGGCTGGCAGCTTTCTGA
LOC_Os04g43760
Os.37893.1.S1_at--1075--3391Chr04:25687827..25687851 (25 bp)
CAGCTTTCTGATTCCGTTGTTGTAT
LOC_Os04g43760
Target Sequence 
GGAGAGCAGGTCGTTCCCGCTGTACCGCTTCGTCCGCGAGGAGCTCGGCTGCGTGTACCTCACCGGAGAGAAGCTCAAGT
CCCCCGGCGAGGAGTGCAACAAGGTGTTCCTGGCCATCAGCGAGCGCAAGCTCATCGACCCGATGCTCGAGTGCCTCAAG
GAGTGGAACGGCGAGCCCCTGCCCATCTGCTGATCGAACCAGTCCACCCGCGAACGCGACAAGATCCAGGAAGAGACGAT
ACGTGCACCGAAATAAGAAAGGGAGGAATTCAGGATCCTGAAGGCTTCTCGTACGCTCATCAGCAGATTACGTTGTTTCT
CCGTCCGTGTTTTTTTTTTCCTTTTTGAGCTTGCTGTATTTATCCGTGTTGTAATCGTGTGAGATTGCTGCTGCAATGCC
GTGGCGCCTGCAGCGTTCATGGCCTTGGCTGGCAGCTTTCTGATTCCGTTGTTGTAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.37893.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis