Browse Element(s) Details


Os.15788.1.S1_at

Description gb:AK069879.1
DB_XREF= gi:32979903
TID=Os.15788.1
CNT=24
FEA=FLmRNA
TIER=FL+Stack
STK=6
UG=Os.15788 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023036K12, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023036K12, full insert sequence.
FL= gb:AK069879.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g4369011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g43650Os.12488.1.S1_at11/114+25607574..25611609aminotransferase, classes I and II family protein, expressed
LOC_Os04g43650OsAffx.15264.1.S1_at2/114+25607574..25611609aminotransferase, classes I and II family protein, expressed
LOC_Os04g43660Os.30529.1.S1_at11/114+25614047..25615913expressed protein
LOC_Os04g43670Os.49679.1.S1_at11/114+25616534..25618685expressed protein
LOC_Os04g43670OsAffx.24879.1.S1_at1/114+25616534..25618685expressed protein
LOC_Os04g43680Os.3388.2.S1_a_at11/114+25623950..25625775Myb-related protein Myb4, putative, expressed
LOC_Os04g43680Os.3388.1.S1_x_at11/114+25623950..25625775Myb-related protein Myb4, putative, expressed
LOC_Os04g43690Os.15788.1.S1_at11/114+25636564..25640943expressed protein
LOC_Os04g43700Os.17432.1.S1_at5/114+25641276..25646478Glycosyl transferase family 8 protein, expressed
LOC_Os04g43710Os.18633.1.S1_at11/114+25648722..25650103phosphoenolpyruvate carboxylase kinase 4, putative, expressed
LOC_Os04g43720OsAffx.10048.1.S1_x_at1/114+25653952..25659331retrotransposon protein, putative, Ty1-copia subclass
LOC_Os04g43720OsAffx.26928.1.S1_at1/114+25653952..25659331retrotransposon protein, putative, Ty1-copia subclass
LOC_Os04g43730OsAffx.26450.1.S1_at11/114+25665811..25669202Protein kinase domain containing protein

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Gene Ontology Classification
GO idTypeName
GO:0009941cellular_componentchloroplast envelope
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.15788.1.S1_at--256--2211Chr04:25637106..25637130 (25 bp)
ACAACCAGTCCGCAGAGTTCTTAGC
LOC_Os04g43690
Os.15788.1.S1_at--611--1211Chr04:25637091..25637115 (25 bp)
AGTTCTTAGCCCACAGCGTATCGAA
LOC_Os04g43690
Os.15788.1.S1_at--601--2491Chr04:25637015..25637039 (25 bp)
AACAGTGCATACATGGTTCTTGAGC
LOC_Os04g43690
Os.15788.1.S1_at--99--10711Chr04:25636951..25636975 (25 bp)
TTGCTGCCTTTGCTTCAGAAATGGA
LOC_Os04g43690
Os.15788.1.S1_at--933--8671Chr04:25636866..25636890 (25 bp)
TGTGTTCCCCATGTTTGTGGCAGAA
LOC_Os04g43690
Os.15788.1.S1_at--794--3051Chr04:25636799..25636823 (25 bp)
AATCGGAGTCGAATTGCATATGCAA
LOC_Os04g43690
Os.15788.1.S1_at--942--4951Chr04:25636784..25636808 (25 bp)
GCATATGCAAATCCCATCAGCGGTA
LOC_Os04g43690
Os.15788.1.S1_at--419--1631Chr04:25636766..25636790 (25 bp)
AGCGGTAGTGCTTTATGACAACAAT
LOC_Os04g43690
Os.15788.1.S1_at--548--6471Chr04:25636718..25636742 (25 bp)
GATAACTTATTTTTCACTTTGCATT
LOC_Os04g43690
Os.15788.1.S1_at--652--2251Chr04:25636669..25636693 (25 bp)
AAATAGGCCCATCGTGTCTTGAGTA
LOC_Os04g43690
Os.15788.1.S1_at--695--6111Chr04:25636617..25636641 (25 bp)
GAGTGAATGCTTTCTGACGGCCAGA
LOC_Os04g43690
Target Sequence 
ACAACCAGTCCGCAGAGTTCTTAGCCCACAGCGTATCGAACAGCTGAAAGCAACTTTCTCAAAGGAGAAATTTTTGCTTA
GTCGAAAAGACAACAGTGCATACATGGTTCTTGAGCAGAGTGCAACGGGAGAAGATGCACTGAGGGGATGGCTAGTTGCT
GCCTTTGCTTCAGAAATGGAAAGATCAGGTGTTGGTTCAGGTGATACAGTTCTAAATGTAGCCTACGAGAGGATGGAGAA
TGTGTTCCCCATGTTTGTGGCAGAAGTTAAGAGTAGAGGCTGGTACACAGATCAATTTTTAGACGGAAATCGGAGTCGAA
TTGCATATGCAAATCCCATCAGCGGTAGTGCTTTATGACAACAATTTTCGGAGTTGAAGAGATGAGCAGATAACTTATTT
TTCACTTTGCATTGTTTGTAAAACATTTGTTTTAATGAAATAGGCCCATCGTGTCTTGAGTATAGACATGGTAAATGTAT
CACTGAATCGAGTGAATGCTTTCTGACGGCCAGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.15788.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis