Browse Element(s) Details


Os.49679.1.S1_at

Description gb:AK101663.1
DB_XREF= gi:32986872
TID=Os.49679.1
CNT=7
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.49679 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J033057M02, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033057M02, full insert sequence.
FL= gb:AK101663.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g4367011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g43630OsAffx.26448.1.S1_at11/114+25597406..25597894hypothetical protein
LOC_Os04g43640OsAffx.26449.1.S1_at11/114+25603585..25606389hypothetical protein
LOC_Os04g43650Os.12488.1.S1_at11/114+25607574..25611609aminotransferase, classes I and II family protein, expressed
LOC_Os04g43650OsAffx.15264.1.S1_at2/114+25607574..25611609aminotransferase, classes I and II family protein, expressed
LOC_Os04g43660Os.30529.1.S1_at11/114+25614047..25615913expressed protein
LOC_Os04g43670Os.49679.1.S1_at11/114+25616534..25618685expressed protein
LOC_Os04g43670OsAffx.24879.1.S1_at1/114+25616534..25618685expressed protein
LOC_Os04g43680Os.3388.2.S1_a_at11/114+25623950..25625775Myb-related protein Myb4, putative, expressed
LOC_Os04g43680Os.3388.1.S1_x_at11/114+25623950..25625775Myb-related protein Myb4, putative, expressed
LOC_Os04g43690Os.15788.1.S1_at11/114+25636564..25640943expressed protein
LOC_Os04g43700Os.17432.1.S1_at5/114+25641276..25646478Glycosyl transferase family 8 protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.49679.1.S1_at--576--5311Chr04:25618093..25618117 (25 bp)
GAAGGTGTTCGGCTCAAGGTCCATC
LOC_Os04g43670
Os.49679.1.S1_at--263--8311Chr04:25618103..25618127 (25 bp)
GGCTCAAGGTCCATCGACAGGTACG
LOC_Os04g43670
Os.49679.1.S1_at--760--3831Chr04:25618145..25618169 (25 bp)
CTGGAGGCCACCACGAGGACCGACG
LOC_Os04g43670
Os.49679.1.S1_at--193--3251Chr04:25618195..25618219 (25 bp)
CAAGCTCGTCAAGCAAGGCAGCGCG
LOC_Os04g43670
Os.49679.1.S1_at--858--10331Chr04:25618386..25618410 (25 bp)
TTGTAGTAGGTCACCTCTTCTGTGA
LOC_Os04g43670
Os.49679.1.S1_at--686--2751Chr04:25618429..25618453 (25 bp)
AAGAAAAATGTTGGCACCGCCGCAC
LOC_Os04g43670
Os.49679.1.S1_at--1037--4191Chr04:25618445..25618469 (25 bp)
CCGCCGCACCGGTGTTTAAGGTGCA
LOC_Os04g43670
Os.49679.1.S1_at--382--4451Chr04:25618599..25618623 (25 bp)
GCCTTCTCAATCCTGTCGGTGTAAG
LOC_Os04g43670
Os.49679.1.S1_at--767--8631Chr04:25618630..25618654 (25 bp)
TGGGATATTACGCTTACGCTGACAT
LOC_Os04g43670
Os.49679.1.S1_at--292--1831Chr04:25618645..25618669 (25 bp)
ACGCTGACATTTCTTTTGGTACGAT
LOC_Os04g43670
Os.49679.1.S1_at--64--7851Chr04:25618662..25618685 (24 bp)
GGTACGATAACGTACTGCCTGAGCC
LOC_Os04g43670
Target Sequence 
GAAGGTGTTCGGCTCAAGGTCCATCGACAGGTACGGGCCACGGCTCACCGTGCTGGAGGCCACCACGAGGACCGACGACA
ATGGCAGCAGCAGCGCCTTCGCCAAGCTCGTCAAGCAAGGCAGCGCGGCTCTGCTCAACGCCTACGCGCGCAAGGGCTTC
CCCTTGGACTCGTGGGAGGTGAAGGCGCTGCTGCTGGAGGCGCTCGTGTCCGAGGACGCCGCGGCCGCGCAGGCCGACCG
GTTCGAGCAGGCCAACGAATCCTGCATCTGAATCCTGGATCCTAATAGCGTGTTTGTAGTAGGTCACCTCTTCTGTGACT
ACCNCCAGCGATCCTGAAGAAAAATGTTGGCACCGCCGCACCGGTGTTTAAGGTGCAATGTGTGTAGTANTANTAGATTG
TATCCGTGTCCTTGTACGCGATTGTTCCTTCNATGTGTTCTGGTGCCGTGTANGCAACGCGTCNTGTATGTTGCTTGTTA
GAGTGATGNCCANCCAGNCCTGCTGGGCCTTCTCAATCCTGTCGGTGTAAGGCAAGTTGGGATATTACGCTTACGCTGAC
ATTTCTTTTGGTACGATAACGTACTGCCTGAGCC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.49679.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis