Browse Element(s) Details


Os.30529.1.S1_at

Description gb:AK108714.1
DB_XREF= gi:32993923
TID=Os.30529.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.30529 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-150-B06, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-150-B06, full insert sequence.
FL= gb:AK108714.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g4366011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g43630OsAffx.26448.1.S1_at11/114+25597406..25597894hypothetical protein
LOC_Os04g43640OsAffx.26449.1.S1_at11/114+25603585..25606389hypothetical protein
LOC_Os04g43650Os.12488.1.S1_at11/114+25607574..25611609aminotransferase, classes I and II family protein, expressed
LOC_Os04g43650OsAffx.15264.1.S1_at2/114+25607574..25611609aminotransferase, classes I and II family protein, expressed
LOC_Os04g43660Os.30529.1.S1_at11/114+25614047..25615913expressed protein
LOC_Os04g43670Os.49679.1.S1_at11/114+25616534..25618685expressed protein
LOC_Os04g43670OsAffx.24879.1.S1_at1/114+25616534..25618685expressed protein
LOC_Os04g43680Os.3388.2.S1_a_at11/114+25623950..25625775Myb-related protein Myb4, putative, expressed
LOC_Os04g43680Os.3388.1.S1_x_at11/114+25623950..25625775Myb-related protein Myb4, putative, expressed
LOC_Os04g43690Os.15788.1.S1_at11/114+25636564..25640943expressed protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.30529.1.S1_at--908--2531Chr04:25615367..25615391 (25 bp)
AACTCCGCTACCATTGACGGTGGAG
LOC_Os04g43660
Os.30529.1.S1_at--1036--6171Chr04:25615391..25615415 (25 bp)
GAGGACGACACGACTACCAAGGAGT
LOC_Os04g43660
Os.30529.1.S1_at--99--8191Chr04:25615491..25615515 (25 bp)
GGAACCTCGTTGAGATCGATCCGGT
LOC_Os04g43660
Os.30529.1.S1_at--224--9291Chr04:25615510..25615534 (25 bp)
TCCGGTGATGCCGATCAACGTTAAT
LOC_Os04g43660
Os.30529.1.S1_at--201--2071Chr04:25615563..25615587 (25 bp)
ACTTGCGCAGGGTTGTGTGATTCAC
LOC_Os04g43660
Os.30529.1.S1_at--427--3151Chr04:25615588..25615612 (25 bp)
AATTCTGCACTTGATCTAGATCCTG
LOC_Os04g43660
Os.30529.1.S1_at--436--7651Chr04:25615617..25615641 (25 bp)
GGGAGTTTTTAGGTGCTGCATCTTC
LOC_Os04g43660
Os.30529.1.S1_at--350--8151Chr04:25615741..25615765 (25 bp)
GGAAACCAGTTTTTGCAGATTCTCA
LOC_Os04g43660
Os.30529.1.S1_at--329--1251Chr04:25615757..25615781 (25 bp)
AGATTCTCAAAAGCTCTTCCAACCA
LOC_Os04g43660
Os.30529.1.S1_at--559--9211Chr04:25615774..25615798 (25 bp)
TCCAACCAGCTTTTGCAGATTCCAA
LOC_Os04g43660
Os.30529.1.S1_at--788--2511Chr04:25615864..25615888 (25 bp)
AACTTGTTGCATGTTCACGTGTCAT
LOC_Os04g43660
Target Sequence 
AACTCCGCTACCATTGACGGTGGAGAGGACGACACGACTACCAAGGAGTATTTTGATGGATCAGATTCGGAGGAGCAGCG
TCAAGAAGAAGAAGAAGAGGACTACGGCGGCGGCATGGACGAATGGAACCTCGTTGAGATCGATCCGGTGATGCCGATCA
ACGTTAATGGTGGCGCCAAGCGTTGGTGACGGAAGTACTTGCGCAGGGTTGTGTGATTCACAATTCTGCACTTGATCTAG
ATCCTGTTTTGGGAGTTTTTAGGTGCTGCATCTTCTCCCAGAATCATAAGTTTCTCCAAACAGTCCAGCTTTTAATCCAG
ATTTTAAGAAGCTGTAGTTATAGAATCAAAAAATAAACTAGAAATCAGAAGCTGGGAAACCAGTTTTTGCAGATTCTCAA
AAGCTCTTCCAACCAGCTTTTGCAGATTCCAACCAACTGCTTCTTAGAATTTTAAACTCTCCCAAACAGGCTCCTATTCT
CCTTCCATTTTTTTCTGAACTTGTTGCATGTTCACGTGTCAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.30529.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis