Browse Element(s) Details


Os.12488.1.S1_at

Description gb:AK059652.1
DB_XREF= gi:32969670
TID=Os.12488.1
CNT=13
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.12488 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023133K04, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-031-C08, full insert sequence.
FL= gb:AK059652.1 gb:AK099280.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g4365011/11aminotransferase, classes I and II family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g43600NANA4+25580765..25582966transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os04g43610NANA4+25584265..25587796transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os04g43630OsAffx.26448.1.S1_at11/114+25597406..25597894hypothetical protein
LOC_Os04g43640OsAffx.26449.1.S1_at11/114+25603585..25606389hypothetical protein
LOC_Os04g43650Os.12488.1.S1_at11/114+25607574..25611609aminotransferase, classes I and II family protein, expressed
LOC_Os04g43650OsAffx.15264.1.S1_at2/114+25607574..25611609aminotransferase, classes I and II family protein, expressed
LOC_Os04g43660Os.30529.1.S1_at11/114+25614047..25615913expressed protein
LOC_Os04g43670Os.49679.1.S1_at11/114+25616534..25618685expressed protein
LOC_Os04g43670OsAffx.24879.1.S1_at1/114+25616534..25618685expressed protein
LOC_Os04g43680Os.3388.2.S1_a_at11/114+25623950..25625775Myb-related protein Myb4, putative, expressed
LOC_Os04g43680Os.3388.1.S1_x_at11/114+25623950..25625775Myb-related protein Myb4, putative, expressed
LOC_Os04g43690Os.15788.1.S1_at11/114+25636564..25640943expressed protein

Select all/Clear all

Gene Ontology Classification
GO idTypeName
GO:0004793molecular_functionthreonine aldolase activity
GO:0016832molecular_functionaldehyde-lyase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.12488.1.S1_at--101--8671Chr04:25608437..25608461 (25 bp)
TGTGGATTCACGCATATCACCTGAC
LOC_Os04g43650
Os.12488.1.S1_at--75--7091Chr04:25608405..25608429 (25 bp)
GTCAAGTCCTTGAACAACGCAATGT
LOC_Os04g43650
Os.12488.1.S1_at--108--2991Chr04:25608385..25608409 (25 bp)
AATGTGCTTGCCATGCCAGCAGGCT
LOC_Os04g43650
Os.12488.1.S1_at--5--1371Chr04:25608084..25608106 (23 bp)
AGAGCATGAGGCTTGTCATCCACTA
LOC_Os04g43650
Os.12488.1.S1_at--498--2031Chr04:25607848..25607872 (25 bp)
ACTACCAGGAATTCATACGGGCACT
LOC_Os04g43650
Os.12488.1.S1_at--298--1911Chr04:25607832..25607856 (25 bp)
ACGGGCACTAGTAGATCACTCCTTT
LOC_Os04g43650
Os.12488.1.S1_at--118--7271Chr04:25607781..25607805 (25 bp)
GTCCAGCTTGCTTGTCATCTCATGA
LOC_Os04g43650
Os.12488.1.S1_at--354--5731Chr04:25607758..25607782 (25 bp)
GACTGATGTACTCACAACTTGGCTT
LOC_Os04g43650
Os.12488.1.S1_at--295--351Chr04:25607729..25607753 (25 bp)
ATAACTGATGTTCACTCTGTTGGAA
LOC_Os04g43650
Os.12488.1.S1_at--137--3011Chr04:25607706..25607730 (25 bp)
AATGAGCTGTTACTATGTGCGCGGT
LOC_Os04g43650
Os.12488.1.S1_at--1110--9131Chr04:25607689..25607713 (25 bp)
TGCGCGGTGGTTCACCTTCAAATAA
LOC_Os04g43650
Target Sequence 
TGTGGATTCACGCATATCACCTGACAAACTGTGTCAAGTCCTTGAACAACGCAATGTGCTTGCCATGCCAGCAGGCTCGA
AGAGCATGAGGCTTGTCATCCACTACCAAATTTCTGATAGTGATGTTCAGTATGCACTGACATGCGTGGAGAAAGCTGCT
GAAGAAATACTGACAGGCAGTAAGAAGTTTGAACATCTGACAAACGGTACTACCAGGAATTCATACGGGCACTAGTAGAT
CACTCCTTTCGTGCCCACTGATGCATCAGTCCAGCGTCCAGCTTGCTTGTCATCTCATGACTGATGTACTCACAACTTGG
CTTAATAATAACTGATGTTCACTCTGTTGGAATGAGCTGTTACTATGTGCGCGGTGGTTCACCTTCAAATAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.12488.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis