Browse Element(s) Details


OsAffx.26449.1.S1_at

Description tigr:9632.m04184
TID=OsAffx.26449.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g4364011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g43590Os.14491.2.S1_x_at1/114+25574061..25579334transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os04g43600NANA4+25580765..25582966transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os04g43610NANA4+25584265..25587796transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os04g43630OsAffx.26448.1.S1_at11/114+25597406..25597894hypothetical protein
LOC_Os04g43640OsAffx.26449.1.S1_at11/114+25603585..25606389hypothetical protein
LOC_Os04g43650Os.12488.1.S1_at11/114+25607574..25611609aminotransferase, classes I and II family protein, expressed
LOC_Os04g43650OsAffx.15264.1.S1_at2/114+25607574..25611609aminotransferase, classes I and II family protein, expressed
LOC_Os04g43660Os.30529.1.S1_at11/114+25614047..25615913expressed protein
LOC_Os04g43670Os.49679.1.S1_at11/114+25616534..25618685expressed protein
LOC_Os04g43670OsAffx.24879.1.S1_at1/114+25616534..25618685expressed protein
LOC_Os04g43680Os.3388.2.S1_a_at11/114+25623950..25625775Myb-related protein Myb4, putative, expressed
LOC_Os04g43680Os.3388.1.S1_x_at11/114+25623950..25625775Myb-related protein Myb4, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.26449.1.S1_at--358--7651Chr04:25603620..25603644 (25 bp)
GGGAGATGACTCCTCTTATTTAATT
LOC_Os04g43640
OsAffx.26449.1.S1_at--673--5471Chr04:25603654..25603678 (25 bp)
GAACTAGTTCTAACAATCTCGCCTC
LOC_Os04g43640
OsAffx.26449.1.S1_at--392--3191Chr04:25603667..25603686 (20 bp)
CAATCTCGCCTCCTAACAGGGTAAA
LOC_Os04g43640
OsAffx.26449.1.S1_at--536--8411Chr04:25604792..25604812 (21 bp)
GGCCGGGTACAGCAACACGTACTGT
LOC_Os04g43640
OsAffx.26449.1.S1_at--552--8591Chr04:25605315..25605339 (25 bp)
TGGTCTAAGTGTGCTGACGTGGCAT
LOC_Os04g43640
OsAffx.26449.1.S1_at--1106--5751Chr04:25605330..25605354 (25 bp)
GACGTGGCATCCCAATCATCAGAGG
LOC_Os04g43640
OsAffx.26449.1.S1_at--621--2451Chr04:25605360..25605520 (25 bp)
AAAATAGTGTGTCCCACATCCGCAG
LOC_Os04g43640
OsAffx.26449.1.S1_at--466--451Chr04:25605527..25605551 (25 bp)
ATCTCGACGATGTGGCGGCAGTTCT
LOC_Os04g43640
OsAffx.26449.1.S1_at--305--7411Chr04:25606258..25606280 (23 bp)
GTGATATCACCGGTGAGGCCCTTGC
LOC_Os04g43640
OsAffx.26449.1.S1_at--869--891Chr04:25606271..25606295 (25 bp)
AGGCCCTTGCGACTTGTGATACACT
LOC_Os04g43640
OsAffx.26449.1.S1_at--1106--4351Chr04:25606317..25606341 (25 bp)
CCACCTTCGCGTTCTAGATGCAAAA
LOC_Os04g43640
Target Sequence 
GGGAGATGACTCCTCTTATTTAATTCCTTTTAAAGAACTAGTTCTAACAATCTCGCCTCCTAACAGGGTAAAAAGATTTT
GCGTGGGAACTAAACAGGGCCTAAATGTCCCAACCGCCGGCCTCAGTTACCTTTCACCCCCGCTCACAGAAACAGACGGA
CAGGGGAGGCGGGACGCGGCCGGGTACAGCAACACGTACTGTGCCAAAAACGACAAGGATATATCTGTGGGCTTGTTGAT
GATTGCACCAGTGAAGGGCAGGGCCGCAGAGGAGGGGAAAAGGAAAAAACAGGTTAGGTTGACTTGGTCTAAGTGTGCTG
ACGTGGCATCCCAATCATCAGAGGAGTTAAAAATAGTGTGTCCCACATCCGCAGGAGAGGATCTCGACGATGTGGCGGCA
GTTCTCCTCCTCCGTGCTGGCGAAGTTCCCGGCAAGAGAAGGGACATCGGCGAGGTCCGCGGTGATATCACCGGTGAGGC
CCTTGCGACTTGTGATACACTTGTTGAGGAAGTGGTGCGCCTCCACCTTCGCGTTCTAGATGCAAAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.26449.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis