Browse Element(s) Details


Os.18649.1.A1_s_at

Description gb:CB622959
DB_XREF= gi:29617947
DB_XREF=OSIIEa10F12.r
CLONE=OSIIEa10F12
TID=Os.18649.1
CNT=4
FEA=EST
TIER=ConsEnd
STK=3
UG=Os.18649 (NCBI UniGene Cluster)
UG_TITLE=Transcribed sequence with weak similarity to protein pir:T04724 (A.thaliana) T04724 hypothetical protein F19F18.160 - Arabidopsis thaliana
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g3169011/11Amino acid acetyltransferase, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g31640OsAffx.20565.1.S1_at1/113+18022030..18024946retrotransposon protein, putative, unclassified
LOC_Os03g31650OsAffx.22722.1.S1_x_at1/113+18025576..18030624retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os03g31660OsAffx.13286.1.S1_at5/113+18034744..18036693Transposable element protein, putative, MuDR
LOC_Os03g31660OsAffx.13287.1.S1_at1/113+18034744..18036693Transposable element protein, putative, MuDR
LOC_Os03g31670OsAffx.25327.2.S1_at4/113+18036888..18037835hypothetical protein
LOC_Os03g31690Os.18649.1.A1_s_at11/113+18042362..18048818Amino acid acetyltransferase, putative, expressed
LOC_Os03g31700NANA3+18054917..18055952hypothetical protein
LOC_Os03g31714OsAffx.11261.1.S1_at4/113+18072048..18073848NA

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Gene Ontology Classification
GO idTypeName
GO:0006526biological_processarginine biosynthesis
GO:0003991molecular_functionacetylglutamate kinase activity
GO:0004042molecular_functionamino-acid N-acetyltransferase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.18649.1.A1_s_at--84--5571Chr03:18043868..18043892 (25 bp)
GAAAGATCATCCGACCCTTAGAAGA
LOC_Os03g31690
Os.18649.1.A1_s_at--115--3051Chr03:18043844..18043868 (25 bp)
AATCTGGTGTCCTAGTGCGGCGAAC
LOC_Os03g31690
Os.18649.1.A1_s_at--167--7611Chr03:18043604..18043628 (25 bp)
GGGAAGTTGCCGCTATTGCTGTATC
LOC_Os03g31690
Os.18649.1.A1_s_at--1151--911Chr03:18042959..18042983 (25 bp)
AGGCATTATCGCTTGGTCTTGAGAA
LOC_Os03g31690
Os.18649.1.A1_s_at--742--5511Chr03:18042937..18042961 (25 bp)
GAAAATATTCTTGCTCACCACACGA
LOC_Os03g31690
Os.18649.1.A1_s_at--969--3411Chr03:18042634..18042932 (25 bp)
CAGACTGGTTTGTTCGGCGTGGCTT
LOC_Os03g31690
Os.18649.1.A1_s_at--411--991Chr03:18042607..18042631 (25 bp)
AGGAGTGTTCGATTGAGTCCCTGCC
LOC_Os03g31690
Os.18649.1.A1_s_at--332--2371Chr03:18042569..18042593 (25 bp)
AAACGAATCGATCTTTCACGTGGAT
LOC_Os03g31690
Os.18649.1.A1_s_at--711--2251Chr03:18042542..18042566 (25 bp)
AAATATTACATCAAGCGGCTCCGGG
LOC_Os03g31690
Os.18649.1.A1_s_at--784--691Chr03:18042474..18042498 (25 bp)
ATGAGATACTGCACGCAATCCCGGT
LOC_Os03g31690
Os.18649.1.A1_s_at--37--3051Chr03:18042458..18042482 (25 bp)
AATCCCGGTGTTGCTCATGAGGTTT
LOC_Os03g31690
Target Sequence 
GAAAGATCATCCGACCCTTAGAAGAATCTGGTGTCCTAGTGCGGCGAACAGATAAAGAGCTTCTAGAAGCATTGAAGTCA
TTTATCGTCGTGGAAAGAGATGGTTCAATCATTGCATGTGCTGCTCTCTTTCCATTTCTTGAGGATAAATCTGGGGAAGT
TGCCGCTATTGCTGTATCTGAAGAATGTCGAGGACAGGGTCAAGGGGATAAGTTACTTGATTACGTCGAGAAGAAGGCAT
TATCGCTTGGTCTTGAGAAAATATTCTTGCTCACCACACGAACAGCAGACTGGTTTGTTCGGCGTGGCTTCAAGGAGTGT
TCGATTGAGTCCCTGCCTGCGCAGAGGAGAAAACGAATCGATCTTTCACGTGGATCAAAATATTACATCAAGCGGCTCCG
GGCAGCAGAGATTGGGCAGATGGCTGTTAACAATTTTGCTGTCAGATGAGATACTGCACGCAATCCCGGTGTTGCTCATG
AGGTTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.18649.1.A1_s_at     

Putative homologies in rice

Putative homologies in arabidopsis