Browse Element(s) Details


OsAffx.11261.1.S1_at

Description tigr:9629.m02884
TID=OsAffx.11261.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g3105011/11hypothetical protein
LOC_Os03g317144/11
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g31010Os.19099.1.S1_x_at1/111+17284003..17285637retrotransposon, putative, centromere-specific
LOC_Os01g31020OsAffx.3613.1.S1_x_at3/111+17288136..17300600retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os01g31020OsAffx.3613.1.S1_at3/111+17288136..17300600retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os01g31020OsAffx.940.1.S1_x_at2/111+17288136..17300600retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os01g31020OsAffx.27522.1.S1_x_at2/111+17288136..17300600retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os01g31020Os.46314.2.S1_x_at2/111+17288136..17300600retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os01g31020OsAffx.31892.2.S1_x_at1/111+17288136..17300600retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os01g31020Os.10731.2.A1_at1/111+17288136..17300600retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os01g31020OsAffx.16187.1.S1_at1/111+17288136..17300600retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os01g31030NANA1+17301626..17302338retrotransposon, putative, centromere-specific
LOC_Os01g31040NANA1+17303804..17305950retrotransposon, putative, centromere-specific
LOC_Os01g31050OsAffx.11261.1.S1_at11/111+17309014..17309853hypothetical protein
LOC_Os01g31070OsAffx.16343.1.S1_at1/111+17314501..17315839retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os01g31080NANA1+17316231..17318848retrotransposon protein, putative, unclassified
LOC_Os01g31090NANA1+17325659..17326471hypothetical protein
LOC_Os01g31100OsAffx.23458.2.S1_at11/111+17332350..17333120hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.11261.1.S1_at--65--2252Chr01:17309054..17309078 (25 bp)
AAATTGTGTCTAGAGGTGGCCGAAC
LOC_Os01g31050
OsAffx.11261.1.S1_at--759--7452Chr01:17309059..17309083 (25 bp)
GTGTCTAGAGGTGGCCGAACCAAAG
LOC_Os01g31050
OsAffx.11261.1.S1_at--805--2411Chr01:17309667..17309691 (25 bp)
AAAAGGGCCAGCGACGGTGGATTTG
LOC_Os01g31050
OsAffx.11261.1.S1_at--547--6512Chr11:8861496..8861520 (25 bp)
GATTTGGCCAGTGACCTTGGCGGCA
NONE
OsAffx.11261.1.S1_at--970--4311Chr01:17309700..17309724 (25 bp)
CCTTGGCGGCAGTTTGGAGTGGTTT
LOC_Os01g31050
OsAffx.11261.1.S1_at--717--692Chr01:17309735..17309759 (25 bp)
ATGAGCTTGAGTGCTCGGTGTTTCC
LOC_Os01g31050
OsAffx.11261.1.S1_at--171--10772Chr01:17309741..17309765 (25 bp)
TTGAGTGCTCGGTGTTTCCAGAGAA
LOC_Os01g31050
OsAffx.11261.1.S1_at--140--7312Chr01:17309745..17309769 (25 bp)
GTGCTCGGTGTTTCCAGAGAAAGAA
LOC_Os01g31050
OsAffx.11261.1.S1_at--881--8191Chr01:17309785..17309809 (25 bp)
GGAAGGGAGAAAAGCCTCTCGCTAA
LOC_Os01g31050
OsAffx.11261.1.S1_at--59--1432Chr01:17309792..17309816 (25 bp)
AGAAAAGCCTCTCGCTAAGATTCGC
LOC_Os01g31050
OsAffx.11261.1.S1_at--1126--2651Chr01:17309796..17309820 (25 bp)
AAGCCTCTCGCTAAGATTCGCGCGA
LOC_Os01g31050
Target Sequence 
AAATTGTGTCTAGAGGTGGCCGAACCAAAGAAAAAGGGCCAGCGACGGTGGATTTGGCCAGTGACCTTGGCGGCAGTTTG
GAGTGGTTTGAGGGCAGGGATGAGCTTGAGTGCTCGGTGTTTCCAGAGAAAGAAGAAGAAGGGGAAAAAGGAAGGGAGAA
AAGCCTCTCGCTAAGATTCGCGCGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.11261.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis