Browse Element(s) Details


OsAffx.25327.2.S1_at

Description tigr:9631.m03115
TID=OsAffx.25327.2
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g316704/11hypothetical protein
LOC_Os01g234302/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g31634Os.57189.1.S1_at1/113+18014639..18016131hypothetical protein
LOC_Os03g31640OsAffx.20565.1.S1_at1/113+18022030..18024946retrotransposon protein, putative, unclassified
LOC_Os03g31650OsAffx.22722.1.S1_x_at1/113+18025576..18030624retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os03g31660OsAffx.13286.1.S1_at5/113+18034744..18036693Transposable element protein, putative, MuDR
LOC_Os03g31660OsAffx.13287.1.S1_at1/113+18034744..18036693Transposable element protein, putative, MuDR
LOC_Os03g31670OsAffx.25327.2.S1_at4/113+18036888..18037835hypothetical protein
LOC_Os03g31690Os.18649.1.A1_s_at11/113+18042362..18048818Amino acid acetyltransferase, putative, expressed
LOC_Os03g31700NANA3+18054917..18055952hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0004722molecular_functionprotein serine/threonine phosphatase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.25327.2.S1_at--503--10671Chr03:18037378..18037402 (25 bp)
TTGCGCAGGGCAACATACAAAGCTT
LOC_Os03g31670
OsAffx.25327.2.S1_at--349--1891Chr03:18037331..18037355 (25 bp)
ACAGTTTTGGCTGCAACTTACCGAG
LOC_Os03g31670
OsAffx.25327.2.S1_at--201--9932Chr03:18037054..18037284 (25 bp)
TACTGGTTGTCCATTGTTGCCACAG
LOC_Os03g31670
OsAffx.25327.2.S1_at--590--3091Chr03:18036900..18036924 (25 bp)
AATACACTCTGCCTGTGTGACTCGT
LOC_Os03g31670
OsAffx.25327.2.S1_at--630--7251Chr03:18036780..18036804 (25 bp)
GTGCCAGTCCCACTTGGTGAAACGG
NONE
OsAffx.25327.2.S1_at--1052--5031Chr03:18036636..18036660 (25 bp)
GCAGATGCTAGCGTGCGGCGAAATA
NONE
OsAffx.25327.2.S1_at--809--4652Chr03:18036626..18036650 (25 bp)
GCGTGCGGCGAAATATTTTTGCTAA
NONE
OsAffx.25327.2.S1_at--474--671Chr03:18036600..18036624 (25 bp)
ATGACACCTTGGGTCGAACAATGGT
NONE
OsAffx.25327.2.S1_at--675--6131Chr03:18036574..18036598 (25 bp)
GAGGGCAACACTCGACATTGTTAAC
NONE
OsAffx.25327.2.S1_at--974--9773Chr10:3949870..3949894 (25 bp)
TAACGAATCCAGACCGTACGACCGT
NONE
OsAffx.25327.2.S1_at--647--1771Chr03:18036541..18036565 (25 bp)
ACCGTACGACCGTTGTCCTATGCAT
NONE
Target Sequence 
TTGCGCAGGGCAACATACAAAGCTTTCCCCAGTGGAGTTGGGGATCAACAGTTTTGGCTGCAACTTACCGAGGTCTTTGT
GAAGCATGCACAAAGACAAGCTTTAAGCAGCCTGTGTTTACTGGTTGTCCATTGTTGCCACAGTGGGCGAATGTTCAGGT
TCGAAGTGCGTACGAATACTTCACTGAAGTGTTCGATCTACTTAAGGAGGATAACGTTCAGTGGTGTCCGTACACCAACG
AGGAGACACAACGCCGTGCCCCTACTGGCCTCAATACACTCTGCCTGTGTGACTCGTCTTACTGGCTGACGAAAAAGATG
CTTCTGTACGATATAGCAGTTGAGGCGTACAGTCCGCAGCATGTAATGAGGCAATTTGGCCTTTACCAAGAAGTGCCAGT
CCCACTTGGTGAAACGGTCCCCCCCAAGATACACTTGCAAAATAGGAAGGCAGATGCTAGCGTGCGGCGAAATATTTTTG
CTAAGATGACACCTTGGGTCGAACAATGGTCGAGGGCAACACTCGACATTGTTAACGAATCCAGACCGTACGACCGTTGT
CCTATGCAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.25327.2.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis