Browse Element(s) Details


Os.18679.1.S1_at

Description gb:AK067438.1
DB_XREF= gi:32977456
TID=Os.18679.1
CNT=9
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.18679 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023110O20, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013103F09, full insert sequence.
FL= gb:AK119236.1 gb:AK099191.1 gb:AK067438.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g3506011/11nicotinate phosphoribosyltransferase, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g35030Os.26822.1.S1_at11/114+21100754..21106265cellulose synthase family protein, putative, expressed
LOC_Os04g35050Os.19099.1.S1_x_at1/114+21112026..21113155retrotransposon, putative, centromere-specific
LOC_Os04g35060Os.18679.1.S1_at11/114+21123052..21130812nicotinate phosphoribosyltransferase, putative, expressed
LOC_Os04g35070Os.51564.1.S1_at11/114+21132258..21133214expressed protein
LOC_Os04g35070Os.51564.1.S1_s_at11/114+21132258..21133214expressed protein
LOC_Os04g35080Os.9839.1.S1_at11/114+21135719..21139578Protein kinase domain containing protein, expressed
LOC_Os04g35080OsAffx.26339.1.S1_x_at10/114+21135719..21139578Protein kinase domain containing protein, expressed
LOC_Os04g35090Os.426.1.S1_at8/114+21142239..2114481040S ribosomal protein S10, putative, expressed
LOC_Os04g35100Os.8221.1.S1_a_at11/114+21144844..21148155MAP3K-like protein kinase, putative, expressed
LOC_Os04g35114Os.36212.1.S1_at10/114+21153387..21157199Protein kinase domain containing protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0019358biological_processnicotinate nucleotide salvage
GO:0004516molecular_functionnicotinate phosphoribosyltransferase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.18679.1.S1_at--695--6171Chr04:21130024..21130048 (25 bp)
GAGGAGCTCCTACAATGCTACTGGC
LOC_Os04g35060
Os.18679.1.S1_at--495--7851Chr04:21130215..21130239 (25 bp)
GGTAGAGTTACCCTCTCTAGAGGAG
LOC_Os04g35060
Os.18679.1.S1_at--81--6131Chr04:21130244..21130268 (25 bp)
GAGGGCGCTGCATGCAACAGCTTGA
LOC_Os04g35060
Os.18679.1.S1_at--488--10631Chr04:21130274..21130298 (25 bp)
TTCGACCAGATCACATCAGGCGGTT
LOC_Os04g35060
Os.18679.1.S1_at--527--4671Chr04:21130293..21130317 (25 bp)
GCGGTTAAATCCAACACCTTACAAG
LOC_Os04g35060
Os.18679.1.S1_at--245--6071Chr04:21130424..21130448 (25 bp)
GAGTTTATCCATTCCCTATGGTTGA
LOC_Os04g35060
Os.18679.1.S1_at--28--3011Chr04:21130448..21130472 (25 bp)
AATGAGGCCCCAGTAGGAGAGTTAC
LOC_Os04g35060
Os.18679.1.S1_at--154--6751Chr04:21130590..21130614 (25 bp)
GTTCATGGGCCCAACCTTATAGGAT
LOC_Os04g35060
Os.18679.1.S1_at--157--10191Chr04:21130607..21130631 (25 bp)
TATAGGATTTTTGCTCCCCAATTTT
LOC_Os04g35060
Os.18679.1.S1_at--383--10091Chr04:21130663..21130687 (25 bp)
TAGGCCAACCTATCTGACTGTACAT
LOC_Os04g35060
Os.18679.1.S1_at--420--6371Chr04:21130692..21130716 (25 bp)
GATCCATTGTACTATACGTCGTTAT
LOC_Os04g35060
Target Sequence 
GAGGAGCTCCTACAATGCTACTGGCCTGGTACATCAAATAAACCTAGGGTAGAGTTACCCTCTCTAGAGGAGATCAGAGG
GCGCTGCATGCAACAGCTTGAAAAACTTCGACCAGATCACATCAGGCGGTTAAATCCAACACCTTACAAGGTGAGTGTGA
GTGCAAAGCTGTATGAGTTTATCCATTCCCTATGGTTGAATGAGGCCCCAGTAGGAGAGTTACAATAGATTTCTACAGAA
GTTGGGAAAAACAGAGAAGCGTATTCTTTGAAGCATAGCAAAATAGCAATACATCAAAGAAAAGTAGAGCTCTGTTGTAA
AAAAATAAAAAAAATCGTCAGTTCATGGGCCCAACCTTATAGGATTTTTGCTCCCCAATTTTTATTAGTACAAACTAGTT
ATCAGTATAGAGATAGGCCAACCTATCTGACTGTACATCCATGATCCATTGTACTATACGTCGTTAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.18679.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis