Browse Element(s) Details


Os.18694.1.S1_at

Description gb:AK062392.1
DB_XREF= gi:32972410
TID=Os.18694.1
CNT=12
FEA=FLmRNA
TIER=FL
STK=0
UG=Os.18694 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) contains ESTs AU031734(R1233),D24093(R1233)~unknown protein (OJ1047_A06.20), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-102-D01, full insert sequence.
FL= gb:AK062392.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g2670011/11Brain protein 44, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g26690Os.11330.1.S1_a_at11/117+15404748..15408054aquaporin PIP2.4, putative, expressed
LOC_Os07g26690Os.11330.1.S1_x_at8/117+15404748..15408054aquaporin PIP2.4, putative, expressed
LOC_Os07g26690Os.11330.2.S1_x_at6/117+15404748..15408054aquaporin PIP2.4, putative, expressed
LOC_Os07g26690Os.31191.2.S1_x_at4/117+15404748..15408054aquaporin PIP2.4, putative, expressed
LOC_Os07g26700Os.18694.1.S1_at11/117+15420165..15423516Brain protein 44, putative, expressed
LOC_Os07g26700Os.10664.1.S1_at1/117+15420165..15423516Brain protein 44, putative, expressed
LOC_Os07g26710OsAffx.16427.1.S1_at11/117+15433836..15434484hypothetical protein
LOC_Os07g26720OsAffx.22367.1.S1_at11/117+15439195..15440486response regulator, putative, expressed
LOC_Os07g26730OsAffx.28605.1.S1_at11/117+15442249..15445052hypothetical protein
LOC_Os07g26740Os.6267.1.S1_at11/117+15447167..1544971760S ribosomal protein L44, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0005739cellular_componentmitochondrion
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.18694.1.S1_at--404--571Chr07:15421245..15421390 (25 bp)
ATCCTATCCTCAGCAAGTCGCTGTG
LOC_Os07g26700
Os.18694.1.S1_at--731--9651Chr07:15421236..15421381 (25 bp)
TCAGCAAGTCGCTGTGGCTTGCACT
LOC_Os07g26700
Os.18694.1.S1_at--968--371Chr07:15420708..15421205 (25 bp)
ATCACACCGAAAAACTGGAATCTTT
LOC_Os07g26700
Os.18694.1.S1_at--627--8191Chr07:15420692..15420716 (25 bp)
GGAATCTTTTCAGCGTTAATGTTGC
LOC_Os07g26700
Os.18694.1.S1_at--1055--711Chr07:15420674..15420698 (25 bp)
ATGTTGCAATGGCTGGTACAGGCTT
LOC_Os07g26700
Os.18694.1.S1_at--221--631Chr07:15420517..15420541 (25 bp)
ATGCTGCTGCATCACTGGAAGGATA
LOC_Os07g26700
Os.18694.1.S1_at--450--10271Chr07:15420459..15420483 (25 bp)
TTTGAGCCAGTCTCAGTTCACTCTG
LOC_Os07g26700
Os.18694.1.S1_at--431--1691Chr07:15420455..15420479 (25 bp)
AGCCAGTCTCAGTTCACTCTGGAGT
LOC_Os07g26700
Os.18694.1.S1_at--949--1971Chr07:15420422..15420446 (25 bp)
ACTGCAGATATCTCTGGCTTTACCC
LOC_Os07g26700
Os.18694.1.S1_at--460--451Chr07:15420413..15420437 (25 bp)
ATCTCTGGCTTTACCCAAGACAAGA
LOC_Os07g26700
Os.18694.1.S1_at--1071--7651Chr07:15420223..15420247 (25 bp)
GGGATACTTCGCTAACAGTAGTCAA
LOC_Os07g26700
Target Sequence 
ATCCTATCCTCAGCAAGTCGCTGTGGCTTGCACTGGNGTCATTTGGTCTCGCTACAGTATGGTTATCACACCGAAAAACT
GGAATCTTTTCAGCGTTAATGTTGCAATGGCTGGTACAGGCTTGTATCAGCTTTCTCGTAAAATAAGGAAAGATTACTTT
TCTGATGAGAAGGATGCTGCTGCATCACTGGAAGGATAATGACGACAGATTAGATTANCCGANCTACAGNCTTTGAGCCA
GTCTCAGTTCACTCTGGAGTCTGGACGNACTGCAGATATCTCTGGCTTTACCCAAGACAAGAACCTGTTGTTTNTTTCTG
TNTTTCTTCTNCACCCACTGCTGGAGCAGTTGAAAATANTGTCCCCAAAANTCCAAANTAATNCTTTTTTNGCATTTTGT
GAAAATAATATGCATATACTCAAAACATCCNTTTCTGTTATGCTGGTGGTGCCCATTAAAATNTGTATCGGGGATACTTC
GCTAACAGTAGTCAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.18694.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis