Browse Element(s) Details


Os.18705.1.S1_a_at

Description gb:AK064890.1
DB_XREF= gi:32974908
TID=Os.18705.1
CNT=5
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.18705 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013000K17, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013000K17, full insert sequence.
FL= gb:AK064890.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g1996011/11Pre-mRNA splicing factor ATP-dependent RNA helicase, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g19930Os.35451.1.S1_at11/113+11189599..11193778Adenylosuccinate lyase, putative, expressed
LOC_Os03g19940OsAffx.12949.1.S1_at9/113+11196562..11197196hypothetical protein
LOC_Os03g19950NANA3+11203351..11203830hypothetical protein
LOC_Os03g19960Os.18705.1.S1_a_at11/113+11216619..11220353Pre-mRNA splicing factor ATP-dependent RNA helicase, putative, expressed
LOC_Os03g19970Os.22909.1.S1_at10/113+11221095..11226313O-acetyltransferase, putative, expressed
LOC_Os03g19980Os.24159.1.S1_at11/113+11231175..11234138pentatricopeptide, putative, expressed
LOC_Os03g19980Os.14563.1.S1_at1/113+11231175..11234138pentatricopeptide, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0005739cellular_componentmitochondrion
GO:0003723molecular_functionRNA binding
GO:0003724molecular_functionRNA helicase activity
GO:0004004molecular_functionATP-dependent RNA helicase activity
GO:0005524molecular_functionATP binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.18705.1.S1_a_at--550--2551Chr03:11219654..11219678 (25 bp)
AACTGTCTAGACCATAAGCCGGAGT
LOC_Os03g19960
Os.18705.1.S1_a_at--247--2671Chr03:11219669..11219693 (25 bp)
AAGCCGGAGTGGGTCATCTACAATG
LOC_Os03g19960
Os.18705.1.S1_a_at--122--7551Chr03:11219849..11219873 (25 bp)
GTGGCTCCACACTATTATGATCTTA
LOC_Os03g19960
Os.18705.1.S1_a_at--955--8811Chr03:11219866..11219890 (25 bp)
TGATCTTAGTAATTTCCCCTCGTGC
LOC_Os03g19960
Os.18705.1.S1_a_at--631--931Chr03:11219892..11219916 (25 bp)
AGGCAAAGCGCGTCCTTGAGAGGCT
LOC_Os03g19960
Os.18705.1.S1_a_at--1071--7671Chr03:11220008..11220032 (25 bp)
GGGTATATCAGCTTGTCGTGCCGGC
LOC_Os03g19960
Os.18705.1.S1_a_at--869--631Chr03:11220044..11220068 (25 bp)
ATGCTTCCTCATCCTATCGTATGAT
LOC_Os03g19960
Os.18705.1.S1_a_at--318--6251Chr03:11220076..11220100 (25 bp)
GATGGATGCTCGTCACTACGTATGA
LOC_Os03g19960
Os.18705.1.S1_a_at--330--9991Chr03:11220120..11220144 (25 bp)
TAGCCGTACAATCTACCAGCAATGG
LOC_Os03g19960
Os.18705.1.S1_a_at--759--7931Chr03:11220193..11220217 (25 bp)
GGATATTATGTACCGGTCTCCCATA
LOC_Os03g19960
Os.18705.1.S1_a_at--475--10211Chr03:11220216..11220240 (25 bp)
TATTTTGATGGTTCTGGCACCCTTT
LOC_Os03g19960
Target Sequence 
AACTGTCTAGACCATAAGCCGGAGTGGGTCATCTACAATGAGTATGTTTTGACCACCAGAAATTTCATCCGCACGGTCAT
GGATATCCGTGGTGATTGGCTGATTGATGTGGCTCCACACTATTATGATCTTAGTAATTTCCCCTCGTGCGAGGCAAAGC
GCGTCCTTGAGAGGCTGTACAACAAGCGGGAGAGGGAAAGAGCTGCTAATAGGAACTGAAGTTGATGGCGTTTTCCCCTT
GCGCTAGCCTTCCACTCGAGAAGATTCGGGTATATCAGCTTGTCGTGCCGGCGCCAACAATGGATGCTTCCTCATCCTAT
CGTATGATTTGGCTTGATGGATGCTCGTCACTACGTATGACATGCCAAATGCTGCTCTCTAGCCGTACAATCTACCAGCA
ATGGCCTAGGATCATATTTTTGTTTCTTTTAGAAGTTGTAGCCTGTGACGCAGGATATTATGTACCGGTCTCCCATATTT
TGATGGTTCTGGCACCCTTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.18705.1.S1_a_at     

Putative homologies in rice

Putative homologies in arabidopsis